Pseudomonas aeruginosa 213BR, IAK_RS0100195
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCCAGCCATAGTCCGCCGGATAGATGTCGCTGGTCAGGCGTTCCTCGTAGCCGTGCAACTGGTCGGGACCGCAGAAGTGCATCTTGCCCGACAGCGCCGT GCGATAGCCGAGGTTGCGCAGGTAGTGGGCGTAGGTGGGGGTATCGGCGGCGAAGTCGGCGGCGTTGTCCCAGGCGCCGATGCGGGTAGGCAAGCGACCG CTGACCAGGGTGAAGCGCGACGGCGCGCAGAGCGGGCTGTTGCAGTACGCCGAGTCGAACACCACGGCCCGTTCGGCGAGGCGCGAGAGGTGAGGCATGC GCAGCACCGAGCGCGGATCGTGAAGCGGCAGCAGCGGCGCGGCCATCTGGTCGGCCATGATGAACAGGATGTTCGGCGAGGTCTTCATCGGGCGGCTTAT CCCATGCGATTGGGTTATGCGATAGTGCTGCGTCGATCATCAGTGCATCGAAATCCCTGGTAAACCGCATGGGGCTGGATGCGTTGGATAAGCCTGGCTT
|
|
| DNA Sequence for Gene |
>IAK_RS0100195
ATGGGAGAACGCCTCATGCCGCTGTCCCTCGACCTGCTCCGGGTATTCGAGTCCGCCGCCCGCCAGCTCAGCTTCACCGCTGCCGCCGAGGAGCTGGGGA CCACTCAGCCTGCGGTCAGCCAGCAGATCAAACGCCTGGAGAAGGAGCTGGCGACCCCTCTGTTCCAGCGCGTCCATCGAGGCATCGTGCTCACCGACGC CGGCCAGCTCCTGCTCCGCCACGTGGCCGCCGGCCTCGAGACGATCGATGCCGGCATCGCCGCGCTGGGCGCGCGCCAGCGCCACGAGGTGCTCCAGGTG GCCACCGACTACGCCTTCGCCGCCTACTGGCTGATGCCGCGCCTTCCGCGCTTCCACCAGGCCCATCCGCATCTGGACGTGAGCCTGGTGACCAGCGAGC GCGGCCTGGCCGGCCAGCGCGGCGATATCGACGTGGCGATCCTGTTCGGCGACGGTCGTTCCAAGCACGGCGAAGCGCACCGGCTGTTTCGCGAGGAGGT GTTCCCGGTCTGTAGCCCGCGCCTGGTCGAGGGATTGCAGTTGCCGCTGGCCAAGGTGCACCTGGCGCGCCTGCCGATGCTGCATCTGAAGCCGGCGCAG CACGCCCGCTGGTTCGACTGGCCGGCGTTGTTCGAAGCGGTGGCCATCGATCGGCAGCCGATTCCGGCGGTGCTCAGCTTCGACAACTACACCTTGCTGA TCCAGGCGGCCATCGCCGGCCAGGGCGTGGCCATCGGCTGGCGCCACCTGGTCGACGGCCTGCTCGAACAGGGGCTGCTTTGCCGGCCCATTGGCGAGAG CTGCCTGTCGCGATACGGGTACTATGCGGTATTGCCGGAGCGCAAGCGGCGCCAGCGGCTGGTCGACGGTTTCGTCGACTGGCTGCAGGCCGAGTTGCAG GCCGGCGGCGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGAGTTGACGATGAACGAGTATTCCACCCCCCGCATCCAGGGCTTCCATGCTCACGTCTATTTCGATGCGCAGAGCATCGAGCGAGCCCGCGCCCTTTGC GAAGAGGCGGCGCGGCGCTTTCCGCTGAAGATGGGGCGGGTCCATGAGCGGCCGGTAGGGCCGCATCCGGACTGGAGCTGCCAGCTGGCATTCGCTCCCG AGGTGTTCGGCGAGCTGGTGCCCTGGCTGGCCATCCATCGGCAGGACCTGGTGGTGTTCATCCACCCGGTCACCGGCAACGATCTGCTCGACCATCGCGA CCGAGCCATCTGGATGGGAGCCATTCGCCCGCTGGACCTGTCGATCCTGGACGAAGGCCCGCAACGCTATGACTTCGCCGTGCCTTGAGGCGCGGTCATC GTCATCCAGTCGTGCAGTTCGCATTGCAGCTCGCCCAGTGCCGTCACCAGGTCGTCGACGGCATCGGCGAGCTTGCGCACGGAGCTTTCGCCGCAGGCGA
|
|
| Amino Acid Sequence |
>LysR family transcriptional regulator
MGERLMPLSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLTDAGQLLLRHVAAGLETIDAGIAALGARQRHEVLQV ATDYAFAAYWLMPRLPRFHQAHPHLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHGEAHRLFREEVFPVCSPRLVEGLQLPLAKVHLARLPMLHLKPAQ HARWFDWPALFEAVAIDRQPIPAVLSFDNYTLLIQAAIAGQGVAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQ AGGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|