Pseudomonas aeruginosa 9BR, GW5_RS0104955 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 9BR 9BRScaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCACCCGCTTGCTTTTGGTATCGGATTCCTCATGCGCCCGAATCATCACCAAGAGCGAATACACAAGGTTCATCGGCTCGGCCTTGAGCCCTTCCCTGTT GTATTCGCGGCCGTCGCTTGCCGTCACGACGGTAATGCCGGCATTCACAATCTGGCCAAGCTGCGCCTGCGCTAGAAGTGGCTCCGCTCGACTCAGACGG TCCAACCCCTCAACGATCAAGACAGACCCTGCCGGGATACGCCCCTCATCGACGGCTCTGAGGAACGCACCCAATGCGCCCTGCTTTACGTGTGTTTCGT GGTACGCCGAAAGCCCTTCGTCACGCAGAGTCAACGTGGCATCCAGTTCCATACCGTGCTTAGAGGCCCAGGCCGAGGCATACGCTAACTGACGGTCGGC GCTACTCCCGGTCGCCTGCCGGGGATCGGAAAACCTCAAATAGCTGTATACTCGCGCGCCGTTTTTTCCCATACCGTGATTCCTGAGGCACCTAAAACTA
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| DNA Sequence for Gene |
>GW5_RS0104955
|rimO
ATGAATTCTCAAAAAGAGCATAAGGCCCCTAGTATAGGATGGGTTTCGTTAGGGTGCCCCAAGGCGCTGGTCGACTCCGAGCGCATCCTCACCCAGCTGC GCATGGAAGGCTATGAGGTCGTTCCGACCTACGAAGACGCCGACGTCGTGGTGGTCAACACCTGCGGTTTCATCGACAGCGCCAAGGCCGAGTCCCTGGA AGTGATCGGCGAAGCCATCGCCGAGAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAGCACGCGATCCGCGACGTCCATCCCAGCGTGCTG GCGGTCACCGGCCCGCAACAGTACGAGCAGGTGGTTACCGCGGTGCACGAAGTGGTGCCGCCGAAGACCGAACACAACCCGCTGGTCGACCTGGTCCCGC CGCAAGGCGTCAAGCTGACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGTTGCAGCTTCTGCATCATCCCGTCCATGCGCGG CAAGCTGGTCAGCCGGCCGGTCGGCGACGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTCAAGGAACTCCTGGTGATTTCCCAGGACACCAGC GCCTACGGCGTGGACCTGAAGTACAAGACCGACTTCTGGAACGGCCAGCCGGTCAAGACCCGCATGAAGGAACTCTGCGAGGCGCTGAGCAGCATGGGCG TGTGGGTTCGCCTGCACTACGTCTACCCGTACCCCAACGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGCTCCTGCCGTACCTCGACATCCCCTT CCAGCACGCCAGCCCGAAGGTGCTCAAGGCCATGAAGCGCCCGGCCTTCGAGGACAAGACCCTGGCCCGGATCAAGCAGTGGCGCGAGATCTGCCCGGAA CTGACCATCCGCTCGACCTTCATCGTCGGCTTCCCGGGCGAAACCGAAGAAGACTTCCAGTACCTGCTCGACTGGCTGACGGAAGCCCAGCTCGACCGCG TCGGCTGCTTCCAGTACTCCCCCGTCGAAGGCGCTCCGGCCAACGAGCTGGGCCTGGAGCCGGTGCCGGACGAGGTCAAGCAGGACCGCTGGGAACGCTT CATGGCCCACCAGCAGGCGATTTCCGCCGCTCGCCTGCAGCTCAAGGTGGGCAAGGAAATCGAAGTGCTGATCGACGAAGTCGACGAACAGGGCGCGGTC GGCCGCTCCTGGGCCGACGCTCCGGAAATCGACGGCAACGTGTTCGTCGACAGCGACGAGCTGAAGCCGGGCGACAAGGTCCGCGTGCGCATCACCGATG CCGACGAGTACGACCTCTGGGCCGAGCTGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTCCCTGAAGAGCCCCGCCCCGCGGGGCTTTTCATCGCCAACCGTTCCGGAGAGCACGATGCTCAACAACGACGTACTACGCAGCCTGCGCTACCTGC TGGATCTTCCCGATGCACATCTGGCCGAACTGGCCGCCCCGTTCGGCGAGCAAGTCGAAGCGGACCTGCTCGAGGCTTACCTGAAGAAGGAAGACGAAGA CGGCTTCCAGGCCTGCCCCGACCGCTACCTGGCGCGCTGCCTGGACGGACTGATCATCCAGCGCCGCGGTCGCGACGAGTCGCGTCCGCTACCGCCGCTG GAGCTGCCGTTGAGCAACAACATGATCCTGAAGAAGCTGCGGGTCGCCTTCGAACTCAAGGAGGAAGACCTCCATGCCATCCTCGACAGCGTCGACTTCC CGGTCTCCAAACCCGAGCTGAGCGCCCTGTTTCGCAAGCCCGGCCACAGCAACTACCGGACCTGCGGCGACCAGTTGCTGCGTAACTTCCTCAAGGGCCT
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MNSQKEHKAPSIGWVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIAENGKVIVTGCMGVEEHAIRDVHPSVL AVTGPQQYEQVVTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTS AYGVDLKYKTDFWNGQPVKTRMKELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKQWREICPE LTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAV GRSWADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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