Strain | Pseudomonas aeruginosa 9BR 9BRScaffold1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TATACATCGCGATGGTGCACATCATGCTGCCGTTCATGATCCTGCCGATCTACAGCGTGATGAAAGGCATTTCGCCGAGCTACATGCGCGCCGCGATTTC CCTCGGCTGCCACCCGTTCGCCAGCTTCTGGCGGGTGTATTTCCCACAGACCGTCGCGGGCGTCGGCGCCGGTTGCCTGCTGGTGTTCATCCTGTCCATC GGCTACTACATCACCCCGGCGCTGCTGGGCAGCCCGAACGACCAGATGGTCAGCTACTTCGTCGCCTTCTATACCAACAGCACCATCAACTGGGGCATGG CCACCGCCCTCGGCGGCCTGCTCCTGCTCGCCACCCTGGTGCTCTACGTCGTCTACAGCTGGCTGGTGGGCGCCAGCCGCCTGCGCCTGGGATAGAGGGC CTTCCGAGAAGGCCAACCGATTCCCCTCTGCCTTCGGAAAAAAGGTTGCCCGGAGGGCGGGGAGAGGGGGATCCGCACGAAACACATTGGAGAGCGAGTC
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DNA Sequence for Gene |
>GW5_RS0103340
ATGCTGAGTCCCTACATGTCCCCGGTCGAGCGCCTGTGGTTCTACTCCCTGCGCATCCTCTGCGGCCTGGTACTGCTGTTCCTGGTACTGCCGGTGCTGG TCATCGTGCCGCTGTCGTTCAACTCCGGCACCTTCCTGGTCTACCCGCTGCAAGGGTTCTCCCTGCGCTGGTACGCCGACTTCTTCCAGTCCGCCGAGTG GATGCGCTCGTTGACCAACAGCATGATCGTCGCTCCGGCGGCGACCCTGCTGGCGATGGTCTTCGGCACTCTGGCCGCGATCGGCCTGACCCGCGGCGAG TTCCGCGGCAAGGCACTGGTGATGAGCCTGATGATTTCGCCGATGGTGGTGCCGGTGGTGATCATCGGCGTGGCCAGCTACCTGTTCTTCGCTCCGCTGG GGCTCGGCAACAGCTACCTGTCGCTGATCGTGGTGCATGCGGTGCTCGGCGTGCCGTTCGTGATCATCACCGTCTCCGCGACCCTGCAGGGGTTCAACTA CAATCTGGTGCGCGCCGCCGCCAGCCTCGGCGCGCCGCCGCTGACCACCTTCTTCCGGGTGACCCTGCCGCTGATCGCTCCGGGAGTGATTTCCGGCGCG CTGTTCGCCTTCGCCACCTCGTTCGACGAAGTGGTAGTGACCCTCTTCCTCGCCGGTCCCGAGCAGGCCACCCTGCCGCGGCAGATGTTCAGCGGCATTC GCGAGAACCTGAGCCCCACCATTGCCGCCGCGGCGACCTTGCTGATCGGTTTCTCCGTACTGCTGTTGCTGACCCTGGAATGGCTGCGCGGGCGCAGCGA GAAGATGCGTACCGCACAACCCGGCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GGCGCAGGGCGCGCCCGGCTTGGTCCGGGCGTCGGCTGCTGCGGCGAAAAGTCGTCATTTTCACCGCCAAAAACCGATAACGGCTACAATGCGCGCCTTC CGTGATCCCCTTTGAGGTGCGCCATGCAACCCTTCGCCATCGCTCCGTCGATCCTTTCCGCCGATTTCGCCCGCCTGGGCGAGGACGTGGACAAGGTGCT CGCCGCCGGTGCCGACATCGTTCACTTCGACGTGATGGACAACCACTACGTGCCGAACCTGACCATCGGCCCGATGGTCTGCTCGGCGCTGCGCAAGTAC GGCGTGAGCGCGCCGATCGACGTGCACCTGATGGTGTCCCCGGTGGATCGCATCATCGGCGACTTCATCGAAGCTGGCGCCACCTACATCACCTTCCATC CGGAAGCTTCCCAGCACATCGACCGTTCCCTGCAACTGATCCGCGACGGCGGTTGCAAGGCGGGCCTGGTGTTCAACCCGGCCACTCCGCTGGAGGTGCT
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Amino Acid Sequence |
>polyamine ABC transporter permease
MLSPYMSPVERLWFYSLRILCGLVLLFLVLPVLVIVPLSFNSGTFLVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGE FRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGA LFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIGFSVLLLLTLEWLRGRSEKMRTAQPGG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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