Pseudomonas fluorescens R124, I1A_005164 (clpV)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAACGCCTGCTGCCGTACCTCGGTTTGCTCAGCTTGCGCGCGCACTCCGCAGCGCTGATCGAAGCCGTGCTGCGTTACTACTTCAAGCACGAAGACCTGG TCATCGAGCAGTGCATCGAGCGTCGCGTGGAGATCCTCGACGAGCAGCGCAACCGCCTCGGTCGCGCCAACAGCCTGCTCGGTGAAGACCTGGTGCTGGG CGAACAGGTGCGCGACCGCAGCGGCAAATTCCGCATTCACATCACCGAACTCGACTGGGAGCGATTCCACGAATTCCTGCCGATCGGTTTCGGTTACCAG CCGCTGTGCGCGCTGGTGCGGTTCACCTTGCGTGACCCGCTCGATTACGACATTCGCCTGGTGCTGCGCCCGGAAGAAATCCGCGAACTGCGCATTGGTG AGAAGAACGACTGTCGCCTGGGGTGGACCAGTTGGCTGGGCTGCGAAAAAGCAGACGGCGTGGTCACCCTGGGCAGCAAAATTCATTAAGGACGTGAGCC
|
|
| DNA Sequence for Gene |
>I1A_005164
|clpV
ATGATCAACGTAGACCTGCAACAACTCATCCAGGCGCTGGACGCCGAAACCCGTCGCGATCTGGAGCGTTCGGCTGAACGTTGCGTGGCCCGTGGCGGCA GCAAGATCCTCGTCGAAGACCTGCTGCTGGGTCTGCTGGAACGGCAGAATGGCTTGCTGTCCCGCGCTTTGCAGGATGCCGATGTCGACGCCGGTGAACT GAGCGCCGCGCTGCAATCTCGCGTTGAACACAGCGCCTCGCGCAACCCGGTGTTTGCCCCGGAACTGGTGCAGTGGCTGCAAGACGCGCTGCTGGTGGCC AACCTCGAACTGGGCCAGACCCAGGTCGAAGACGCTGCGTTGATCCTCGCGCTGCTGCGCAACCCGATGCGCTACGCCGGCAGCCGTTACCAGCCGCTGC TCGCCAAACTGAACATCGATCGCCTGAAGGAATTTGCCCTGTCGCAACAGGAGCAACCAGCCGCCAACGGCAAGCCGGCGGCGCAGGGCGAATCGCTGCT GCAGCGCTTCACGCACAACCTGACCCAACAGGCCCGCGAGGGCAAACTCGACCCGGTGCTGTGCCGCGATGGCGCGATCCGGCAGATGGTCGACATCCTC GCCCGTCGCCGCAAGAACAACCCGATCGTGGTCGGTGAGGCCGGCGTCGGTAAAACCGCCATCGTCGAAGGTCTGGCCTCGCGCATCGCTGCCGGTGAAG TGCCGCAGGTGCTCAAGGGCGTCGAGCTGCTGTCGCTGGACATGGGTTTGCTGCAGGCCGGCGCCAGCGTCAAAGGTGAATTCGAGCGGCGTCTCAAAGG CGTGATCGACGAGGTCAAAGCCTCGCCGAAACCGATCATTCTGTTCATCGACGAAGCCCACACCCTGATCGGCGCGGGCGGCAATGCCGGTGGTTCCGAC GCGGCCAACCTGCTGAAACCGGCACTGGCCCGTGGCGAACTGCGCACCATCGCCGCCACGACCTGGGCCGAGTACAAGAAATACTTCGAGAAGGACCCGG CGCTGGCCCGTCGTTTCCAGCCGGTGCAACTGCACGAACCGACCGTCAGCGAAGCGGTGACCATTCTCCGTGGTCTGGCGCAGGTCTACGAGAAGAGCCA CGGCATCTACCTGCGGGATGACGCGGTGGTCTCCGCTGCTGAGCTGTCCGCCCGCTATCTGGCCGGTCGCCAACTGCCGGACAAAGCCGTCGACGTCCTC GACACCGCGTGTGCCCGCGTGCGCATCAGCCTCGCCGCCGCCCCGGAAAGCCTCGAACGCCTGCGTGGCGAACTGGCCGAAGGTGGCCGTCAGCGTCAGG CTCTGCGCCGCGATGCCGAGGCCGGTCTGCTGATTGACCACGAAGCGCTGGATGCGCTGGAAGCGCGACTGGACGAAGCCGAAAGCGAAATGGTCGCGCT GGAAAGCCTGTGGACCGAACAGAAGCAATTGGCCGAGCGCCTGCTGGAACTGCGTCAGCAACTGGCCAAGGCTCGCGAAGCTGCCGCCGTCGAGCCGACC GTCAGCGTTGAAGAAGACGCTGAAGGCACGGTGATCGAAACCCTCGTTGCCGAGGTCGAGGAAGGCCAGAGCGTCGAAGTGCTGGAGGCCGAGCTGAATA AGACCCACAGCGCCCTGACCGCTGCGCAGGTCAAGGAGCGTCTGGTCAGCTTCGAAGTCTGCCCGCGTCTGGTGGCCGAAGTGATCAGCGCCTGGACCGG CGTGCCCCTGGCGCAACTGGCCCGCGAACACAACGCCAAGGTCGCGAGTTTCGCCACCGACCTGCGCACGCGTATCCGTGGTCAGGAACAAGCCGTGCAT GCTCTGGATCGCTCGATGCGCGCCACGGCGGCAGGCCTGAACAAACCGGACGCGCCGGTCGGCGTGTTCCTGCTGGTCGGCCCGAGCGGCGTCGGCAAGA CCGAAACCGCGCTGGCCCTGGCTGACCTGCTGTACGGCGGTGACCGCTTCATCACCACCATCAACATGTCCGAGTTCCAGGAGAAGCACACCGTCTCGCG TCTGATCGGTGCGCCACCGGGCTACGTCGGTTATGGCGAGGGCGGCATGCTCACCGAAGCGGTGCGCCAGAAGCCGTACTCGGTGGTGCTGCTCGATGAA GTCGAGAAGGCCGATCCGGACGTGCTCAACCTTTTCTACCAGATCTTCGACAAGGGCGTGGCCAACGACGGCGAAGGTCGCGAAATCGATTTCCGCAACA CTTTGATCCTGATGACCTCGAACCTGGGCAGCGACAAGATCAGCGACCTCTGCGAAAACGGCGCCCGCCCGACCGCCGAGCTGCTGGAAGAGACCATTCG CCCGGTGCTGAGCAAACACTTCAAACCGGCGCTGCTGGCGCGGATGAAAGTGGTGCCGTACTACCCGGTCGGCGGCCCGGTGCTGCGCGAGCTGATCGAG ATCAAGCTCGGTCGTCTCGGCGAGCGCCTCAACCGTCGTCAGCTGGATTTCAGCTGGTGCCAGAACCTCGTCGATCACCTGTCCGAGCGCTGCACGCAAA GCGAAAGCGGCGCGCGCCTGATCGACCATCTGCTCGACCAGCACGTGCTGCCGCTGGTAGCCGATCGTTTGCTCGATGCGATGGCCACCGGTGAAAGCCT CAAGCGTGTACATGCCACGCTCGACGGTAACGCCAGCGTGACGTGCGAGTTCGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGTGGGTGTGATGTTCACTCAAGTGCCGCAGCCACTGGTCTATGCCGAAGCCTTGCTGGCGCAGTTCGCCAGCCTGTCGCGCGCGGCGGACGGTGCTGCG CTGCTGGGTGACTTCGTGCGTGGTCTGGCCGAGCTGAGCGGTTGCGAACTGACGCAGCTGTACCTGCTCGACGCCACCCACACCTGCCTGGGGATGAACG CCGAATGCCTCGACGGCGCGCTGCAACCGCGCGCCGCCACCAGCCTGCCGGCGGACTACAACGGTGAGCAGTTGCTGCAGTTTGCCCTGTGCCAGAACCG CGTGGTGTGCCTGGATGATCTGGGTGCCAGCCTGCACGAAACCAGTTTCCTGCCGGCCACCGCCGGAGCATGGCAATCGCTGCTGTGCGTGCCGCTGGTC AATCAGCAGAAGGCAGTAGAAGGCCTGTTGCTGTGCGCCAGTCGCCGTCACGTCGATCTGCAGGGTTTTGCCGATTCCCTCGGCCAGCTCGGCTCGTTCG
|
|
| Amino Acid Sequence |
>ATPase AAA
MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERQNGLLSRALQDADVDAGELSAALQSRVEHSASRNPVFAPELVQWLQDALLVA NLELGQTQVEDAALILALLRNPMRYAGSRYQPLLAKLNIDRLKEFALSQQEQPAANGKPAAQGESLLQRFTHNLTQQAREGKLDPVLCRDGAIRQMVDIL ARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKGVELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSD AANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVL DTACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLLIDHEALDALEARLDEAESEMVALESLWTEQKQLAERLLELRQQLAKAREAAAVEPT VSVEEDAEGTVIETLVAEVEEGQSVEVLEAELNKTHSALTAAQVKERLVSFEVCPRLVAEVISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVH ALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDE VEKADPDVLNLFYQIFDKGVANDGEGREIDFRNTLILMTSNLGSDKISDLCENGARPTAELLEETIRPVLSKHFKPALLARMKVVPYYPVGGPVLRELIE IKLGRLGERLNRRQLDFSWCQNLVDHLSERCTQSESGARLIDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGNASVTCEFA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|