Pseudomonas fluorescens R124, I1A_005160

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCTCGCCGCTCGACCGCTTTTTTCAAGACGCTGACTGCGCTCACCGTACTGGTGCTGCTCGCCGGTTGCTCGTCGCTGTCGCCGTACTCGAAAGTGACCA AAGTCAATCTGAAGCTGACCGGCAGCGATCAGCTCAACCCGGACCTCAACGGTCGTCCGTCGCCGATCGTCGTGCGCCTGTTCGAACTCAAGCACCCGGT AACCTTCGAGAACGCTGATTTCTTCAGCCTCTACGAGCGCGCCAAGGAATCCCTCAACCCGGATCTGGTGGCCAGCGAAGAACTCGAACTGCGCCCGGGT GAAACCGTGGAAATGAAGCTCAGCGTGGAGGAGGGCAGCCGCTACGTCGGCGTTCTTGCCGCGTATCGCGATCTGCCGGAAACCAAGTGGCGCTACACCG TGCAGGTCACGCCGCTGGAACTGACCGATGCCGATCTGACTCTGGATCAGGCCGGGATCCGCAACACCCATGAAGCGCTCGCCAAGGCGGATGACTGAAC
DNA Sequence for Gene
>I1A_005160
ATGAATACCCATAAAGTCATTTGGCAGGAAGGCATGCTGCTGCGGCCGCAGCACTTCCAGCACAACGATCGCTATTACGATCACCAGATGAAAACCCGCA CCCAGTTGCTGGGTGGTTACACCTGGGGTTTCCTCAATCTGGAGATCGACCTGCAGTTCCTCAACATGGGCAAACTGGTGATCAGTGCCGCCTCGGGGAT TCTGCCGGACGGCAGCCTGTTCGAACTCGGCGGCAACACCGAGCCGCTGGCGCTGGACGTGCCGCCAAACACCGGCAACACGCCGATTTACCTGGCGCTG CCGTTGGTCACCGGTAACCACATCGAAGCGCGCCGTCCGGAGCAATCCGACGTGCTGGCGCGGTACACCGCGTATGACGCCGAAGTGGCTGACTCCAACG CCGGCGACGATTCCGCCAGCCAGGTCAGCTGTGGCCGCCCGGACTTCAAACTGTTGCTCGGCGAGCAGCAGAGTGATCAGGCCTACGTGAAGCTGAAGAT CTGCGACGTGCTCGACACCACGCCGGACGGCGTGATCAGCCTCGATCCGGATTTCGTACCGACTTACATTCAGGCCCACGCTTCCAGTTATCTGCTGTCG TGCCTGAAAGAAGTCATCAGCATGCTCAACCACCGTGGCGACACGATTGCCGAGCGGATTCGCTCCAACGGCAAGGTCGGCGGTGCGGAAGTCGGCGACT TCATGATGCTGCAACTGATCAACCGCACCGAACTGCTGCTGCGCCATTACCTCGGTCTGGAGCAGGTGCACCCGGAAGAGTTGTACCGCACGCTGCTGAC CATGCTCGGTGATCTGGCGACCTTCTCCAGCGACAGCAAGCGCCCGCGTCTGGACAGCCGTTATTCCCACGCCGATCAGGGCGCGAGCTTCCGCAAACTG ATGGAAGCGATTCGTCAGGTGCTGTCGATGGTGCTGGAACAGCACGCCATCGAACTGATCCTGCAGGCGCGTCAGTACGGGATCATCGTTTCGCCGTTGC ACGACCACAAACTGCTCGGCTCGGCGTCGTTCGTGCTGGCGGCAAGTGCCAAATGCGACTCCGAAGAACTGCGCCACCGCTTGCCGGCGCACCTCAAGGT CGGCCCGGTGGAGCGCATCCGCCAACTGGTCAACCTGCACCTGCCGGGGATCAAGGTCAAACCGTTGCCGGTGGCCCCGCGGCAGATCGCGTTCCACTCG AACAAAACCTACTTCATCCTCGAACTCAGTTCCGAAGACCTGGCGCAACTCGAGCGCTCCGGCGGCTTCGCGTTCCACGTGTCCGGCGAATTCGCCGAGC TTGAACTGAAATTCTGGGCCATCAGGAACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCGACATGATCAAGGAAACGGATTACAACCAGGACGACAAAACCGTCCTGCTCGATCGTCAGGGCCACGGACCGGCAGCCAGTCCGCTGACCGACTTCGC CGCGCCGCCGCGCTTCGAGCAACTGGAAGAACGGATGATCTACGCCGCGCGCCTGCGCCCGGCTGAGGCGTTCAACATCAGCCTCAATTCGCTGGTGGCG GCGTCGTCCGAACTGCTCTCGGAAGTGGTGCGCCTCAAGCACAGCGAAACCCGCGAAGACCTCTACGCGCTCAACGAGCGCCTGACCGCCGGGCTCAAAC TGTTTGAAGTGCGCGCGTTGCACAACGGCGCCGAAAGCAGTCAGGTGATGGCCGCCCGTTACGTGCTCTGCACCGTGGTCGACGAAGCTGTCGTGACCAC ACCGTGGGGCAACGAAAGCGAGTGGTCGCAGATGAGCCTGCTCAGCAGCTTCCACAACGAGACGTTCGGTGGCGAGAAGTTCTTTCAGCTGCTTGATCGG
Amino Acid Sequence
>type VI secretion protein
MNTHKVIWQEGMLLRPQHFQHNDRYYDHQMKTRTQLLGGYTWGFLNLEIDLQFLNMGKLVISAASGILPDGSLFELGGNTEPLALDVPPNTGNTPIYLAL PLVTGNHIEARRPEQSDVLARYTAYDAEVADSNAGDDSASQVSCGRPDFKLLLGEQQSDQAYVKLKICDVLDTTPDGVISLDPDFVPTYIQAHASSYLLS CLKEVISMLNHRGDTIAERIRSNGKVGGAEVGDFMMLQLINRTELLLRHYLGLEQVHPEELYRTLLTMLGDLATFSSDSKRPRLDSRYSHADQGASFRKL MEAIRQVLSMVLEQHAIELILQARQYGIIVSPLHDHKLLGSASFVLAASAKCDSEELRHRLPAHLKVGPVERIRQLVNLHLPGIKVKPLPVAPRQIAFHS NKTYFILELSSEDLAQLERSGGFAFHVSGEFAELELKFWAIRN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site