Pseudomonas fluorescens R124, I1A_003714
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGAGAAGGGCATCGTCGAGCGACCGGATACGGCGAAGATGGCTCAACTGATGTGCCGCAAGCGCCTGCATTGATGGGCTGTGGCGTCTGAAAGGACGCC ATCGCCAGCAGGCTGGCTCCTACATTGATCGGTGTCGAGCGCAAACCCTGTAGGAGTGAGCCTGCTCGCGATGGGGCCATCAAAGTCAATAAACATCTCC AAATCAAGCCCCAAATCTGCATTCAAAGAAGCTCTGAGCCTCTCTCGTCCCCTTTACGCCTGTCATCGGTCAACTAACTATGCTCCATGCGCATCTGGGG GATAGGTGCGTGGCGGCTCTTGTGATAACATCCGGCGTTTTCCGAGGCAGCTTCACGGAGCTGTCTTTACTGCGCAAATCCACGGTCCGAATTGTTGATT TGTCGTAAGTCGGCGCATGGCACTCAGCCTGCCCCGACGAGCTTCGTACATCCCATATGGATATGACGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTC
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| DNA Sequence for Gene |
>I1A_003714
ATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAACAGTCCTATCTCGACTACGCGATGAGCGTAATCGTCGGCCGTGCAC TGCCGGATGCGCGCGATGGCCTCAAGCCCGTGCACCGTCGCGTACTGTTCGCGATGAGCGAGCTGGGCAACGACTTCAACAAGCCGTACAAGAAATCTGC CCGTGTTGTCGGTGACGTAATCGGTAAGTATCACCCGCACGGTGATACCGCGGTGTACGACACCATCGTCCGCATGGCTCAGCCTTTCTCCCTGCGCTAC CTGCTGGTTGACGGTCAGGGCAACTTCGGTTCGGTCGACGGCGACAATGCTGCCGCCATGCGATACACCGAAGTGCGCATGACCAAGCTGGCGCACGAGC TGCTGGCCGACCTGCACAAGGAAACCGTGGACTGGGTGCCGAACTACGACGGCACCGAAATGATCCCGGCGGTGATGCCGACGCGCATCCCCAACCTGCT GGTCAACGGCTCCAGCGGTATCGCCGTGGGCATGGCGACCAACATTCCGCCGCACAACCTCGGTGAAGTCATCGACGGTTGCCTGGCCCTCATCGACAAC CCTGAGCTGACCGTCGATGAGCTGATGCAGTACATCCCCGGTCCGGACTTCCCGACTGCCGCGATCATCAACGGTCGCGCCGGCATCATCGAAGCCTATC GCACTGGCCGCGGCCGCATTTACATGCGTGCCCGCTCGATCATCGAAGACATCGACAAGGTCGGTGGCCGTCAGCAGATCGTCATTACCGAACTCCCTTA CCAGCTGAACAAGGCGCGTCTGATCGAGAAGATCGCCGAGCTGGTAAAAGAGAAGAAACTCGAAGGCATCACCGAGCTGCGCGACGAGTCCGACAAGGAC GGTATGCGCGTCGTGATCGAACTGCGTCGCGGCGAAGTGCCTGAGGTGATCCTCAACAACCTCTACGCCCAGACCCAGCTGCAATCGGTATTCGGCATCA ACATCGTCGCGCTGATCGACGGCCGTCCACGTATCCTGAACCTCAAGGATCTGCTGGAAGCCTTCGTCCGTCACCGTCGCGAAGTCGTCACCCGTCGTAC CGTGTTCGAGCTGCGCAAGGCCCGCGAGCGTGGTCATATCCTCGAAGGCCAGGCCGTTGCCCTGTCGAACATCGACCCGGTGATCGCCCTGATCAAGGCG TCGCCGACCCCGTCGGAAGCCAAGGAAGCGCTGGTCAGCACGCCTTGGGAATCTTCGGCGGTGGTGGCGATGGTGGAGCGTGCCGGTGCCGATTCGTGCC GTCCGGAAAACCTCGACCCGCAATACGGTCTGCGCGAAGGCAAGTACTTCCTGTCGCCAGAACAGGCGCAAGCCATTCTGGAACTGCGTCTGCACCGTCT GACCGGTCTGGAACACGAGAAGCTGCTGGCCGAGTATCAAGAGATCCTCAACCAGATCGGCGAGCTGATCCGCATCCTCAACAGCGCCGTGCGCCTGATG GAAGTGATCCGCGAAGAGCTGGAAGTGATCCGCGCCGAATACGGCGACGTGCGTCGCACCGAGATTCTCGATGCGCGCCTCGATCTGACCCTGGGTGACA TGATCCCGGAAGAAGAGCGCGTCGTGACCATCTCCCACGGTGGCTACGCCAAGACCCAGCCGCTGGCTGCGTACCAGGCTCAGCGTCGTGGCGGTAAAGG CAAGTCGGCGACCGGCGTCAAGGATGAGGACTACATCGCTCACCTGCTGGTCGCCAACAGCCACACCACGCTGCTGCTGTTCTCCAGCAAGGGCAAGGTG TACTGGCTGAAGACTTACGAAATTCCGGAAGCGTCCCGCGCCGCTCGTGGTCGTCCGCTGGTCAACCTGCTGCCGCTGGATGACGGTGAATACATCACCA CCATGCTGCCGGTCGAGGAATACACCGAAGGTCACTTCATCTTCATGGCGACCGCCAACGGCACCGTCAAGAAGACCCCGCTGGAATCCTTCAGCCGTCA GCGCAGCGTCGGTCTGATCGCGCTGGAGCTGGACGAAGGCGACGTGCTGATCTCCGCGGCCATCACCGATGGCGAGCGCGAAGTGATGCTGTTCTCCGAC GGCGGCAAGGTGACGCGCTTCAAAGAGTCCGATGTACGTGCCATGGGCCGTACCGCCCGCGGTGTGCGCGGCATGCGTCTGCCGGAAGGGCAGAAGCTGA TTTCGATGCTGATCCCGGAAGAAGGCAGCCAGATCCTCACCGCTTCCGAGCGTGGTTATGGCAAGCGCACCGCGATCACCGAGTTCCCTGAGTACAAGCG TGGCGGCCAGGGCGTGATCGCCATGGTCAGCAACGAGCGTAACGGCCGTCTGGTCGGTGCGGTACAGGTGCTCGACGGCGAAGAAATCATGCTGATCTCC GATCAGGGCACTCTGGTGCGTACCCGTGTCGACGAAGTGTCGAGCCTGGGTCGTAACACCCAAGGCGTGACCCTGATCAAATTGGCCAAGGATGAAACCC TGGTCGGTCTGGAGCGGGTTCAGGAGCCATCGGAAGTCGAAGGCGAAGAGCTGGAAGGTGAAGAGGGTGCCGGGTTCGAGGGGGATGTCGTGATCGACGA CGTTGCCGAGGACCAGCAACTCGACGCCGCAGCTGACGAAGAGCCGCAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGACAAGCGAGGGGGCGGATGAAAATTCGCCCCCTTGTTATTTGTCCGGTATGAAACATCGACATCATGGAGATCCCCTGTGGGAGCGAGCCTGCTCG CGAATACAGACGCTGCGGTACCTCTGACGCACCGCGGTGATGCATTCGCGAGCAGGCTCGCTCCCACAGGGCTGTGTTGATCGGTAGTGTGATTTATTGC GTGATACCACCAAATCAGAGCGAGATTGGATGTGAGCAAGCGAGCCTATAACTTCTGTGCCGGTCCTGCGGCGCTTCCTGAAGCTGTACTGCAACGTGCC CAGGGTGAACTCCTTGATTGGCACGGCAAGGGGCTGTCGGTCATGGAAATGAGCCATCGCAGTGATGAGTTCGTGTCCATTGCCACCCAGGCCGAGCAGG ACCTGCGTGACCTGCTGAATATCCCGTCGAATTATAAAGTGCTGTTTCTGCAAGGTGGCGCCAGCCAGCAGTTTGCGCAGATCCCGCTGAATCTGTTGCC
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| Amino Acid Sequence |
>DNA gyrase subunit A
MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN PELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA SPTPSEAKEALVSTPWESSAVVAMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGELIRILNSAVRLM EVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV YWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHFIFMATANGTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSD GGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLISMLIPEEGSQILTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLIS DQGTLVRTRVDEVSSLGRNTQGVTLIKLAKDETLVGLERVQEPSEVEGEELEGEEGAGFEGDVVIDDVAEDQQLDAAADEEPQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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