Pseudomonas fluorescens R124, I1A_003000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGTAATCAATACGCGGGATCACCGCTGTCGATTCGATCTCGACATTCGGCACCTTGCCGCCCAACGAGCTGATGTTGAGCTTCGTCGACTTGTAATGG TTGTAGTAGAGGTTGAACGCGACCATGTTCTCCGGAAGGCTGTCGACCTCCAGCGGCAGCAGAAGAACCCGTCGGTGCCGGGGCCGATGTTGTCGACCCC GGCTTCGGTGGCCAGGGCCGGCAGGGCCGCTGAGCAACCGAGCAGAGTCAGTGCCAGACGCAAGGGAAATGTGGCGCGGTTCGGGCTCATGGCTGTCCTC ATTATTATTGTGTTGGGACGTGGCGCCGGTACGCAGAACGTCCGGCACCATAGAAATAAGCGCTTGGCGTGCGACGGGGCAGGGTATTGGCGGACAGTTA GGGGGGCTTCTGCGGACAGTCGGCCAACCCTGTGCTAACTTCCTTCGACATAACCGGTTACAAAAATAACAATCAAGCGTGATCCGGAATGTCAGTCCCC
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| DNA Sequence for Gene |
>I1A_003000
ATGAACGTAAAAGTCCAAGACCCCACTTTTGAACTGGCGCTGGTCTCGCCGTTTCTCCTGCAAACCCTCGCCGAAGTCGCGCAGAACAAAGGCATCGACC CCGAAAGCCTGTGCCGTGGCCTGGGTTTCACCTTTGAAGATCTGCAGGATCCGGCGCAACGCATTTCCTACCGTCAGGCCGTGGCGATGATTCAACGCGC GCTCAAAGTGCTGCCCAATCAGGGGCTGGGGCTGTGGGTCGGGGCGCAGAATGTGTTGGGTACGCTGGGGTTGCTCGGGCACGTGCTGTCGCTGTGCAAG ACCTTGCGCGATGCCTTTGCCCTGGGTATCCGCCACCAGCACACCTCCGGCGGAATCGTGGTGTCCAGTGTCGATGTAGTCGGCGATCAGGTGCACCTCG ATGCCGAATGTCGCTTGCCGTTCGCCGATGTGCAGGTATTCGCCGTCGAAGAGTTTTTCGCCAGCCTGCTGGTGTATGGCCGGGCCTTGGTGGGCCATGA GTTCAAGGCGATTGCCGTGGAATTTGTCCACGCCGCGCCGGATTACCTGAGCGAATACCACCGCCTGCTCGGGCCCGATGTGCGTTTCGGCTGCCTGCAC AATCGCATGCTGATCGATGTCCAGTGGCTGGACGTCAACCTGCCCAATCATCATTCGCTGGCGCTGCGTCAGGCGGTTGCCTTGCTGGAGCTGGAAGCGG CACAGGTGCATCAGAAACTCGATCTGATTCAGGCAGTGGAACGGGCGATTGCCCGGGACTTGAGCCGGGGCAGCCATATCGAAAAAATCGCCGGCGACCT GAACATGAGCAGCCGCACCCTGCGCCGCCGTTTGACCGAGCATGCACTGACGTTCGAGGCGCTGCTGGAGCAGGTGCGTCAGGCGCGGACCATGAGTCTG CTGGCCAATCCTGAGATGCCGATTGAACGCATCACCGAAGAGGTTGGCTACAGCGACGTGCGCAGTTTTCGCCGGGCGTTCAAGCGCTGGACGGGGATGA GCCCGAGTGCGTGGCGCCAGGATGCAAGCACCGCTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACATCGGTCCCCTGTGGCGAGGGAGCTTGCTCCCGCCGGGCTGCGCAGCAGACCCAAAACCTGCCACGCCATTCCTCCAGACACACCTTGCCGGCGGGGT TTGCGGGTGCTTCGCCCCCTAGCGGGAGCAAGCTCCCTCGCCACAGGCTTCCGTGCGCCACTCACCAGTATTCCAACCCCACAAACCCTCCGGCTACAGG TAAACTCCCGCGCACTTTCCCAAGGAGTTCACATGAGTTACTACCAGCCGGGCATTCTCGCCACCCCTGTTCCTGCGCAAGCACGTCATCTGTTTTTCGC CCTTGAGTCGGTAGCCGCACTGCCGCAGGCGATCGACAACCTGATGAATCTGGTGGACGGCAAATCGGCTGTGATCGGTTTCGGTGAATCCTTGACCAAG GCCTTGAATGTGCAGATCGACGGCCTGCGCAGCTTCCCGGCGATGACCGGCGTCGGCGTGGAAAATCCGTCGACCCAGCACGCGCTGTGGGTCTGGCTGC
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| Amino Acid Sequence |
>AraC family transcriptional regulator
MNVKVQDPTFELALVSPFLLQTLAEVAQNKGIDPESLCRGLGFTFEDLQDPAQRISYRQAVAMIQRALKVLPNQGLGLWVGAQNVLGTLGLLGHVLSLCK TLRDAFALGIRHQHTSGGIVVSSVDVVGDQVHLDAECRLPFADVQVFAVEEFFASLLVYGRALVGHEFKAIAVEFVHAAPDYLSEYHRLLGPDVRFGCLH NRMLIDVQWLDVNLPNHHSLALRQAVALLELEAAQVHQKLDLIQAVERAIARDLSRGSHIEKIAGDLNMSSRTLRRRLTEHALTFEALLEQVRQARTMSL LANPEMPIERITEEVGYSDVRSFRRAFKRWTGMSPSAWRQDASTA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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