Pseudomonas fluorescens R124, I1A_002168
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTCATTTTGTGCAGACGATTTTTGAGTGTTGTTTTGTTTGCGCTGCTCGCCGGTTGTTCTTTTTTCGGGCCGAAAGTCGATCTGGACAGCCTGACCCTC GACGTCGCGCCCAAGGCCAATGACGACACGCCCATTGCCGTGGATTTCGTTGCAGTCAACGATCCGGATCTGCTCAAGCAGCTGTCGGGCATCAGTGCCA GCCAGTGGTTTGCCGGGCGCGACCAGTACCAACGCGACTATCGTCAGCTGATGAGCGTGTGGGGGCTGGAGCTGGTGCCGGGGCAATTCATCGACCGCCA GACCTTCCCGCTGGGGGGCAAGAAGGCGGCTGGACTTTTGGTCTTCGCCAGCTATAACACACCCGGAGCGCACCGCTTGCGGCTCGACGATCAGCGCGAA GCCTGGCTCAAGTTCGACAGCCGCGAGATGAGCCTGGTCAGCAAGGAAAACTGAAACACACCGCTCGCCGCCGGGTTGCGGCATGGTCGAAGGGAGTCGT
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| DNA Sequence for Gene |
>I1A_002168
ATGAGTCTGCTACCTGACGCGGTCTGCTGGCATGAAGGCATGCAATTGCTGCCGCAGCATTTTCAGTTGCAGGGCCTGCGTGCCGAAGCCCTCGGTGCGC ATATGGCGCAAGCGTGCAACCCGTGGTTCTGGGGCGTCAGTCGCATGGAGTTCGATCCCTCGGCGTTGAGCGCCGGGGTGGTTCGCGTGCTGGCGTTGCA AGGCACCATGCCTGACGGTCTGCCGGTGGATCTGCAAGCCGGTATCGGCCCGATTCTGGAACTCGATATTGGCCCGGCCATCAACGCCACCGACGATGCC ACCGTCACCGTTTACCTGGCGATCAGTCCGTTGTGGCGCGCCGGGCAACTGCTGCCGCTGAAGGGACGCCTGCAATCGGTGGTCGGTGAAGCGCTGCCGG ATCTGACCAGTGGCGAGTTCCCGGAATCGATCACCGTGTGGCGACCCAACCCACGCCTGTGCACGCAATTGAACAAGGCCGATTCGATTTGCCTGCCGCT GCTGAAAATCCGCAAGGAAGGCGGAGGTTTTCTGCCGCTGGCCTATACCCCGCCGACTCCGATCCTGTTGCCCGATTCGCCGCTGGGCCGGCGCGTCGCC GGGTTGTGTGCACGGGCGCGGGAAAAGTGCATGTTCCTCGGCGGTCGATTGCGTCAGGCGCAACAGGCGGGCAATCAGGACGATGCGCTGGAGATTCGCC GGCAATTGACCGCGTTGTGGGCACGGCTGCCGGAAGTCGAAGGCACACTCAACAGTCGCATCGCCCATCCGCAGAGTTTGTATGTGCAGCTACTCGGACT GGCCGGCGCCTGGTCGGCACTCGATCCGCTGGCCGGGGTGCCGGCGTTCGCGCCGCTGGATTTTCTTGAGTTGCAGCGCGGTTACGACGCGGTGCTGCAA TGGCTGGAAATCACCCTCGAACTGATCCGCGCCGGCTATCGCAGCCTGCCGTTCGAGCGCGGCGAACAGAGCTTTTCAATTCAGTTGCCCGATGAGCAAC CGAGCCAGCGGCTGGTCATTGGCCTGCGCATGCCCAACGGGGCCAGCGAGCAGGCGGCCAGTGAATGGCTGCGCAGTGCAATCATCGCCTCGGCGCCGCA CGTTGCCTTGCTCAGCCGCCAGCGCATGAGCGGATTGAGCCACCAGGCCATGAGCCGCAGTGAACAAGTGGCCTACAGCGTCGGCGATGACACGCGGCTG TTTGTGGTCACGGCCGAAGGCGCGTGGTTCGACGCACAACTGCCGCTGATGATCGCCGCGCCAGCAGCGAAGTTGACCAGCAGTCCGTGGCAGGTGGTGC TGTTTGTTGCGCAGACGAGTGAAAGTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACACAAGGAACGCAGCATGTCGGAAGGGACTGCCGGGGCCGGAACGAGAAATCTGAGTTTGCAGGACGCGCCGCTCAGCAGCGCATTTCGGCAGACGT GGCAGCAATGGTCGCTGGACTGGAGCCAGTTGCCCAAGGACCGCGAGGACGAGGCGGCTCTGGTCGAAACCGTGGTCGAACTCTCGACTCAGGCCTCGCA ACGATTGTGGCGCACGGCGTACTCACGGGTAGGGGATTCGGCCACTGAGCAAGTCAAGGCGCTGGTCTATGCCTTTGTCGCGCTGGTTGATGAAACCCTG TTGTTCAGCCCGTGGCCGGGGCAATCGGCCTGGCAGAGCAAACCTCTGGAGTCGCGTCTGTATTCGACGCGCCAGGCCGGCGAGCAACTGCCGGCGGCGA TTCAAACAGTGCTCGATGAACAACAACCGACCGCTCGCGATCTGGGCAACGTCTACCTGCAGTGCCTGATCCTCGGTTTTCATGGGCGACTGCGCGGCGA
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| Amino Acid Sequence |
>type VI secretion protein
MSLLPDAVCWHEGMQLLPQHFQLQGLRAEALGAHMAQACNPWFWGVSRMEFDPSALSAGVVRVLALQGTMPDGLPVDLQAGIGPILELDIGPAINATDDA TVTVYLAISPLWRAGQLLPLKGRLQSVVGEALPDLTSGEFPESITVWRPNPRLCTQLNKADSICLPLLKIRKEGGGFLPLAYTPPTPILLPDSPLGRRVA GLCARAREKCMFLGGRLRQAQQAGNQDDALEIRRQLTALWARLPEVEGTLNSRIAHPQSLYVQLLGLAGAWSALDPLAGVPAFAPLDFLELQRGYDAVLQ WLEITLELIRAGYRSLPFERGEQSFSIQLPDEQPSQRLVIGLRMPNGASEQAASEWLRSAIIASAPHVALLSRQRMSGLSHQAMSRSEQVAYSVGDDTRL FVVTAEGAWFDAQLPLMIAAPAAKLTSSPWQVVLFVAQTSESA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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