Pseudomonas fluorescens R124, I1A_001614 (cobD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGGCCTGATGCAGCCGTGGCGCTTCATCCGCATCAGCGATCGCGCCTTGCGCGGGCAGATTCAGCACCTCGTCGAAGAAGAGCGCATCCGCACCGCCG AAGCCCTCGGCGAGCGCAGCGACGAGTTCATGAAGCTCAAGGTCGAGGGCATCAACGACTGCGCCGAAGTCCTGGTCGCGGCATTGATGGACGATCGCGA AAAACACATTTTCGGCCGTCGTACGCTGCCGGAAATGGACATGGCCTCGCTGTCCTGCGCGATTCAGAATCTGTGGCTGGCGTCCCGTGCCGAAGGACTG GGCATGGGCTGGGTGTCGCTGTTCGAACCGCAGGCACTGGCCGATCTGCTGCAGTTGCCGGCCGGGGCCAAGCCGCTGGCAGTGTTGTGCCTGGGCCCGG TCAAGGAATTCTATCCGGCGCCGATGCTGGTACTCGAAGGGTGGGCGCAGGCGCGTCCGCTCAATGAGTTGCTGTACGAAAATTATTGGGGAGTGAGTCA
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| DNA Sequence for Gene |
>I1A_001614
|cobD
ATGAGTGTGGCGTTGTTGAGTGTCGCCGCGGTCGCGCTGGATGCGCTGCTGGGTGAACCGAAACGCTGGCATCCGCTGGTGGCGTTCGGCAATTTTGCCG GGCGCATCGAGCGCCGTTTCAATGCGGGCGGGCGCGGCTGGCGCAGTCACGGGGTCACTGCGTGGGTGATCGCCGTGTTGCCGCTGACCTTGCTCGCCAC TGCGTTTTCCTGGGCACCGTACGTGGGCTGGATCGTCGAGATTCTGGCGCTGTATTGCGCCCTCGGCATGCGCAGCCTCGGTGAGCATGTCGCGCCGGTA GCCGCGGCCTTGCGCGCTGATGATCTGCAAGAGGCGCGCAAACGCGTCGGCTATCTGGTCAGTCGCCAGACCAGCGAACTGGACAGCACCGCCGTCGCTC GCGCCGCCACTGAATCGGTGCTGGAAAACGGCAGTGACGCGGTGTTCGCCGCGCTGTTCTGGTTTGTCGTGGCTGGTGCGCCGGGCGTGGTGCTCTATCG CCTGAGCAATACCCTCGACGCGATGTGGGGCTATCGCAACGAACGCTTCGAGCGCTTCGGCTGGTGCGCGGCAAAAATCGACGACGTGCTCAACTACATT CCGGCACGGCTGGTGGCACTGACCTACGCGCTGCTGGGCAACACCCGGCTTGCCTGGAAATGCTGGCGCACTCAGGGGCCGCAATGGGACAGCCCTAACG CCGGTCCGGTGATGGCGGCCGGTGCCGGTGCGTTGGGTGTCGAACTGGGCGGGCCAGCGATCTATCACGGCGAACTGCATCAGCGTCCGCAACTGGGTGA AGGTCCGCCAGCCGATGCCGATTCGATTGATCGCGGCTGGCAATTGGTCCAGCGCGGGGTATGGTTATGGCTGCTGATTCTCTGCGTGGGGGCTGAATTC TATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGGTGGCCGGCTGCGCAAGGCTGCACTCGATTACGGGATTGCCGAGGCTGACTGGCTCGACCTGTCCAGCGGCCTCGCGCCGTGGCCATTTGCGGTG CCGGAGATCCCGTTGCGCGCCTGGGCACGCTTGCCGGAAACCGATGACGGACTGGAGCAGGCCGCGTGCGATTACTACGGCGCCTCGCAGGTGCTGCCGG TGGCCGGTTCGCAAATGGCGATCCAGTTGCTGCCGCGTTTGCGTCGCGCCGGCAAGGTCGGCGTGTTGTCGCCGTGTTATGCCGAGCACGCTGAAGCCTG GCGCCGCAGCGGTTACATCGTGCGCGAAGTGCTGGAGCAGGAAGTCGAATTCTTTCTCGACAGCCTCGACGTGCTGGTGGTGGTCAATCCGAACAACCCG ACAGGCCTGAGCCTGACCCCGGCGCGGCTGCTCGATTGGCACGCGCGGCTGGCTCAGCGTGGCGGCTGGCTGGTGGTCGATGAAGCGTTCATGGACAACA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLSVAAVALDALLGEPKRWHPLVAFGNFAGRIERRFNAGGRGWRSHGVTAWVIAVLPLTLLATAFSWAPYVGWIVEILALYCALGMRSLGEHVAPV AAALRADDLQEARKRVGYLVSRQTSELDSTAVARAATESVLENGSDAVFAALFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWCAAKIDDVLNYI PARLVALTYALLGNTRLAWKCWRTQGPQWDSPNAGPVMAAGAGALGVELGGPAIYHGELHQRPQLGEGPPADADSIDRGWQLVQRGVWLWLLILCVGAEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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