Pseudomonas fluorescens R124, I1A_001272
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCATGGGCGCAGCTTAGCACTGCGCGCTTTCATCGTTACAGCACACGTATCGTTATAACCCGATATACCGATTTATGCGGTCATCAGATCAAATTCATA TTGGTATATCGCGAAATACCGATTTAAAGTTCGCCTCATCGCGATATAGCGCTACACATCACGAGCATAAAGCCATGAACCTCGACCTCGACGAAATAAT AAAAGCCCTGGCACACCCAGTACGGCGAGACATTCTCATCTGGCTGAAAGACCCCAAAGCCCAGTTTCCTGAGCAGATTCACAACCACGAGTACGGCATC TGCGCCGGGCAGATCGATCAACGCTGCGGCCTTTCGCAGTCGACCGTCTCCGCTCACCTGGCGACCCTGCAACGCGCAGGTCTGATCAGCAGCCAGAAAG CCGGCCAGTGGCACTTCTTCAAACGTAACGAGGACGTGATCCAGGCGTTCCTCGACGCCATCGTCAAAGAGCTCAGCGCTCCCACAAGGAATTGATTCAA
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| DNA Sequence for Gene |
>I1A_001272
ATGCCCCTCTCGCTACTCATCCTGGCCTTGAGCGCCTTCGCCATCGGTACCACCGAGTTCGTCATCATGGGCCTGCTGCCCGATGTGGCGGCCGACCTCG GTGTGTCGATCCCGGGCGCCGGCTGGCTGGTGACCGGTTACGCCCTGGGCGTGGCCATCGGTGCGCCGTTCATGGCACTGGCCACCGCCAGACTGCCGCG CAAGGCCGCACTGGTAGCGCTGATGGGCATTTTCATCGTCGGTAACCTGCTGTGCGCCATCGCCAGTGACTACAACGTGCTGATGTTCGCCCGTGTCGTC ACCGCGCTGTGCCACGGTGCGTTCTTCGGTATCGGTTCTGTCGTAGCTGCCGGACTGGTAGCGCCGAACAAACGCGCATCCGCCGTGGCGCTGATGTTCA CCGGCCTGACCCTGGCCAACGTCCTCGGTGTACCGCTGGGCACGGCACTGGGTCAGGAGGCCGGCTGGCGTTCGACCTTCTGGGCGGTGACCGTGATTGG TGTTGTGGCGCTGATCGGTCTGATCCGCTTTCTGCCGGCCAAGCGTGACGAAGAAAAACTCGACATGCGCGCCGAACTCGCCGCCCTGAAAGGCGCCGGC ATCTGGCTGTCGCTGAGCATGACCGCGCTGTTCGCCGCGTCGATGTTCACCCTCTTCACCTACGTCGCACCGCTGCTCGGCGATGTCACCGGCGTCTCGC CCAAAGGCGTGACCTGGACCCTGCTGCTGATCGGCCTCGGTCTGACGGTGGGCAACATCATCGGCGGCAAACTGGCGGACAAGCGTCTCGGCGCGACCCT GATCGGTGTGTTCGTGGCGATGGCGGTGGTCTCCACCGTGTTGAGCTGGACCAGCGTGGCGCTGATCCCGACGGAAATCACTCTGTTCCTCTGGGCCACC GCTTCGTTTGCCGCCGTCCCGGCGCTGCAAGTCAACGTGGTGACCTTCGGCAAGGCCGCACCGAACCTGGTGTCGACCCTGAACATCGGCGCTTTCAACA TCGGCAACGCCTTGGGCGCCTGGGTCGGCGGCAGCGTCATCGCCCACGGTTTCGGCCTGACCAGCGTGCCCCTGGCCGCCGCTGCGCTGGCCGTGCTCGC GCTGCTGGTGACCCTGATCACTTTCCGTCAGAACGGCGATGCCGGCCTGGCCCCTGCTACCCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTAACCACTTAACTGACGAGGGTTGTACACATGGCAACTATTTTCGATCCGATCAAACTGGGCGACCTCGAGCTGTCCAACCGCATCATCATGGCCCCGC TGACCCGCTGCCGCGCCGATGAAGGCCGCGTGCCGAACGCACTGATGGCCGAGTACTACGTGCAACGCGCCTCCGCCGGCCTGATCCTCTCCGAAGCCAC TTCGGTGACGCCGATGGGCGTTGGCTACCCGGACACCCCGGGCATCTGGTCCAACGATCAGGTGCGCGGCTGGACCAACGTGACCAAAGCCGTGCACGCT GCCGGCGGCAAGATCGTTCTGCAACTGTGGCACGTCGGCCGCATCTCGCACCCGTCGTACCTCAACGGTGAAACTCCGGTCGCGCCGAGCGCCATCCAGC CTAAAGGTCACGTCAGCCTGGTGCGCCCATTGGCCGACTACCCGACTCCACGTGCCCTGGAAACCGCTGAAATCGCCGAGATCGTCGACGCCTACCGCAC
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| Amino Acid Sequence |
>Arabinose efflux permease
MPLSLLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMALATARLPRKAALVALMGIFIVGNLLCAIASDYNVLMFARVV TALCHGAFFGIGSVVAAGLVAPNKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVVALIGLIRFLPAKRDEEKLDMRAELAALKGAG IWLSLSMTALFAASMFTLFTYVAPLLGDVTGVSPKGVTWTLLLIGLGLTVGNIIGGKLADKRLGATLIGVFVAMAVVSTVLSWTSVALIPTEITLFLWAT ASFAAVPALQVNVVTFGKAAPNLVSTLNIGAFNIGNALGAWVGGSVIAHGFGLTSVPLAAAALAVLALLVTLITFRQNGDAGLAPATH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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