Pseudomonas fluorescens R124, I1A_000869 (lptA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGGTCGGCTACTGGAATATCAGTCCGGAACGCTTCCTCGACAAGCCTGCAGCCAAGGCCGAAGACACTGCCATCGACTGGTACGCCACCAATACCCAC ACCTTTCAGTACCTCCCGGACGGCAAGCTGCAATACGAGATGACGTCGGACAAGGCCGAGCACCTGAAAGCGACGGATGTGACGCTTGTCACCAAACCCG ACCTGAACATGTTTCGCGGCACCGAGTTTCCGTGGCACGTGACCAGCGAGCGCGGTGAAGTGAATTCGGGCGGCACCGAGGTCGAACTGATCGATTCCGT ACGCGTCAAGCGTACTGACGAAAAGAACCGCAACACCTTGATCACCAGCACACGCATGACAGTGTTCCCGCAGCAGCAATATGCGCAGACCGCGCAACCC GTTAGAATCGACGGCGCTGGGGGTGTATCGACTGGCGTGGGAATGAAGGCGTATTTGAAGGAAAGCAGGATACACCTGCTATCTAACGTAAGAGGACAGT
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| DNA Sequence for Gene |
>I1A_000869
|lptA
ATGAGGCTCGTTAAAACCCTCCCTATTTTGCTCAGTCTGGGCGCAGCACTGGGAAGCGTGAGCGCCTGGGCTCTGCCGAACGATCAAGAGCAGCCCATTC GCATTCAGTCCGACGATGCCCAGATCGACGACAAGAATGGCGTTGCCACTTATAAAGGTGACGTGATCATTACCCAGGGCTCGATGAAGGTGACCGGTAA TACCGTGACTCTGACTCGCACTCCGGACGGCGAAATCGACGTAGTGACCTCGGTGGGCAACCTCGCCTACTTCGAACAGCTGCAGACTGCCGGCGACAAA AAACCTGTGCAGGGCTGGGGCGTGACCATCCAGTATCACGCGCAGCAGAATCGCGTCGTGCTGATCGACAAGGCCAAGGTTGTCGACAAGGACAACAACA CCACTCAGGGCGAAAAAATCGTCTATGACACGGTGAAAAAACTGGCCAGCGCCGGCCGCGCTACCGGCAGTAAAGTCACCGAGGCGCGTCCGCGCATCGA CATGGTGATCCAGCCGAAGAAGAAAACCGACGAGAAAACCCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGCAACTCTGAAAGCTCAACACCTGGCCAAGGCCTATAAAAGCCGCCAGGTTGTGCGCGACGTCAGCCTGTCGATCGACAGTGGCCAGATCGTTGGCCT GCTCGGCCCGAACGGCGCCGGCAAGACGACCTGCTTCTATATGATCGTCGGCCTGGTGCAGGCCGATCAGGGCCGCGTGTTGATCGATGATCTGGACGTC AGCCATCAGCCGATGCACGGCCGCGCCAAGGCCGGTATCGGCTATCTGCCGCAAGAAGCGTCGATCTTCCGCAAACTGTCGGTGGCCGATAACATCATGG CCATCCTCGAAACCCGCGCGGAACTCGACAAGGCCGGTCGTCGCAAGGAACTGGAAAGCCTGCTGCAGGAATTCCACATCAGCCACATCCGCGACAACCT CGGCATGAGCCTGTCCGGTGGTGAACGCCGCCGGGTGGAAATCGCCCGCGCACTGGCGACCGCACCAAAATTCATCCTGCTCGACGAACCGTTCGCCGGT
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| Amino Acid Sequence |
>organic solvent tolerance protein OstA
MRLVKTLPILLSLGAALGSVSAWALPNDQEQPIRIQSDDAQIDDKNGVATYKGDVIITQGSMKVTGNTVTLTRTPDGEIDVVTSVGNLAYFEQLQTAGDK KPVQGWGVTIQYHAQQNRVVLIDKAKVVDKDNNTTQGEKIVYDTVKKLASAGRATGSKVTEARPRIDMVIQPKKKTDEKTQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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