Pseudomonas fluorescens R124, I1A_000498
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCACCCCCGAAGAACTGTCGAAGAAGTTTCGCTACAACCAGCGCCGCGAACTGCGCCTGCTGGAAGAGGCGGGTGGTGTGGTGCGCCCGGTCGGCGAGT TCTCCAGCGCCGAACTGGCGGCGATCTACTGTGATCTGTTCCAGCGTCGCTGGGGCTTCCCGGCCACCGGCGCGGCGCGCATGGCCGAAGTCATCGAGCT GCTGCGCGAACTGTTGATCGGCTCGGTGATTTTCCTCAACGATGCACCGATCGCCATTCAACTGGTGTACCGCGTCGAAGCGCCGGAGTGGATCAGCGTC GAATACATCAACGGCGGCGTTGACCCCGAGACCCGCGAATTCAGTCCGGGCAGCGTGTTGAGCTTTCTCAATACGCAAAGCGCCTGGGAGCATGCGCGGG CACTGGACAAGCCACTGCGGTTTTCCTTCGGTCGCGCCGACCGTGAATACAAGGATCGCTGGTGCAATCCTGTGCCGGTGTTCACCGTATGAGTCAGCCC
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| DNA Sequence for Gene |
>I1A_000498
ATGAGCCGCAAACAGCAACTGCTCAAGCGTCATCGTCGCAATAAACGCATCACCTTGTTGATCGCCCTGGTCGTGTTGATCGCGCTTGGCGTGCTGGTGA AGTGGTGGTTGCCGCTGGTGCTCGCGGTAATTGGCTGGGTCGCCCATGAGGCGTGGTTTGCCGATCACCTGTTCTATTCGCCGAAAGACGATTACCAGTA CAGCTTTCCGCCGTTCACACCGCAGCCGAAGGTGCATTTGAGCGGCGAGCAATTGCGTCTGGACGAAGGCGTGATGCTGGTCGACGAAGCGACGTTGATC CTCGCGATAAAGGTCAAAAGCACTTGGCTGGGACGTTTTCTCGATCCACGCGTCGAACTGCTCGGCGGGGCGCATCCTGATGCACAAACCTTCGAGCGCG GGGTCAATGGCCTGCGTTACCTGAACCTCAGCGGTCAGGCGCAAGCCTTGGCGCAAGGTCAGCTGCGCTTGCGCGGGCGCTTTTGCCGGGTCTTTGGCGA GCCGGTGCTGTGGGCGCTGGAGCAACCGGATTACCGCCGTCAGCGGGTGATGGTGATTGCCCCGCACGCCGACGATGCCGAACTGGCGGCTTATGGCTTG TACAGCCAGGCCGACGAAGCCTGGATCGTCACCCTGACCGCTGGCGAGATCGAAGCCGAACACTATCAACAGATGGGCATGAGCAAGGTCGAGGCGGCAC GGCTCAAGGGCCGGTTGCGCGCCTGGGACAGCCTCGCCGTACCGCGTTGGGCCGGTGTACCGCAGGAGCACTGCGTGCAGCTCGGTTACTTCTGTCTGCA ACTGGCAGCGATGCAGGCTGCGCCGAATCAGGTGGTGGCTTCGCGCGAAGCGGACTTGAGCGACACGCGACTGTTTCGCCAGTTGAATCCGTTCACCTTG CCCGGCGATGCCGATGGCGCGCCGACCTGGAACAACCTGCTGGCCGACCTGCGTGAAGTGCTGCTGCGCGCACGTCCGGAGGTGATCGTGCTGCCGCACC CGACCCTCGATCCGCATCCCGATCACCTCTGCGCCCAGCAAGCGGTGTTGCAGGCGCTGCACGGTCTCGACTGGCAGCCGACGCTGCTCGGCTACGCCAA CCATCTGCATGACAACGACCGTTGGCCGATGGGCAGCACCGGGCAGGGCATCGCTTTGCCGCCGGCCTTCGATTCGGCAGTGCCGATGCAACCGCTGTGC CTGCCGCTGTCCATCGAGTTGCAACGCGACAAGGCCATGGCGCTGGGCATGATGCATGACTTGCAGCCGCCGGCACCGTTCAAGCGTCGCCTGCGCCGGG TGATCCAGCGCGTGTTGGCCGGTCGGGCCTCGTCGGTATACGGCGAAAACGAATTTTTTCGAAAAGCCATCAGGCGCCAGGAGTTGTTCTGGCTACTGAA GCACGGTGAGACAGGCGTCCAGCGGGGAGAGTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCAACGGTTCAAGGTGTTGCAGCTGCAACCCGACTACAACGTCAAAGCCCATGACTTTGCCGACCTTGCCGAGCAGATCGTCAAGGCATTGCCGAGCGA GCGCTATGAGATCACCGCCGCTTTCCTGCGCGGCAAACCGGGGCCGGGCGAGCCGGTGAGCCGCGCCGACCATTCGGTGTACTTCGAGTTTTCCGACAAG TCGCTCAAAGGCATGCGCCTGCGGGCGATGTGGCAGTTGTACAAGTTCTGTCGCCGGGAAAAGTTCGACGTGGTGATCTGCAATCGCTTCAAACCGGTGA ACATGATGCTCGCGCTCAACCGCTGGTTGAAGGTGCCGCTGTGCATTGGCATCTCCCACGGTTTCGGCGAATACGATCGCTTCTACCGGCGTCGGCAGAC CCAGCGCCTGATCGATCGGCACTGGCGCTTCGTCGGTGTGTCGCCGGCGGTCAAACAGTACCTGCTCGATTGCGACTGCGGCTTCACCGACCAGAACACT
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| Amino Acid Sequence |
>GlcNAc-PI de-N-acetylase
MSRKQQLLKRHRRNKRITLLIALVVLIALGVLVKWWLPLVLAVIGWVAHEAWFADHLFYSPKDDYQYSFPPFTPQPKVHLSGEQLRLDEGVMLVDEATLI LAIKVKSTWLGRFLDPRVELLGGAHPDAQTFERGVNGLRYLNLSGQAQALAQGQLRLRGRFCRVFGEPVLWALEQPDYRRQRVMVIAPHADDAELAAYGL YSQADEAWIVTLTAGEIEAEHYQQMGMSKVEAARLKGRLRAWDSLAVPRWAGVPQEHCVQLGYFCLQLAAMQAAPNQVVASREADLSDTRLFRQLNPFTL PGDADGAPTWNNLLADLREVLLRARPEVIVLPHPTLDPHPDHLCAQQAVLQALHGLDWQPTLLGYANHLHDNDRWPMGSTGQGIALPPAFDSAVPMQPLC LPLSIELQRDKAMALGMMHDLQPPAPFKRRLRRVIQRVLAGRASSVYGENEFFRKAIRRQELFWLLKHGETGVQRGES
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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