Pseudomonas fluorescens R124, I1A_000256
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGGCGACCGCGATGCGGTGTTCAACGTCTACGAATCGCTGCTCTCGGAACGGCCTGCCGATCGCTCGATCGTCGTCAGTCTGCTCGACAACCCCAACA TCAAGACCACCGGCACCGTACGTGAAATCACCCCGGCGGTGTCGGCGCAATCGGGCACGGTGCAGGTCAAGGTCACCCTCGACAGCCTCCCGCAAGGCAT GCAGCTCGGCTCGGTGGTCAGTGCCACCGCCAAGGGCACTGGCAAAACGGCAGTGGAATTGCCGTGGTCGGCGCTGACCAAAAACATCAGCGACCCGGCG GTGTGGATGGTCGATGACAAGGGTCAAGCGCAATTGCATAACGTCACCGTCGGCCGCTACCTGACCGGTAAGGTCATTATCAGCGGCGGCCTCAACGGCG GTGAAAAAGTCATCGTTGCCGGTGGACAACTGCTGCACCCGGGCATGAAAGTCGAAATCGCCGAAAACACCTACAAGGATCTGCAACCGGGAGCACAGCC
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| DNA Sequence for Gene |
>I1A_000256
ATGAAGCGTTTGGGGCTGTTGTCCATTGGCGTGCTGCTGGCTGCCTGCTCGAAAAGCGAACCACCGCCGGAGCCGGTGCGGCCGGTGCTGTCGATCAAGG TGCAGGCGCTGAACGAAGAAACCCTCGGGCGTTTCGCCGGCAGCATTCAGGCGCGCTACGAGAGCAATACTGGGTTTCGCGTTGGCGGGCGCATCGCCAG TCGCAACGTCGATGTCGGCGCCGAAGTGGATAAGGGCACGCTGCTTGCCACCCTCGACCCGACCGATCAACAGAACCAGTTGCGCTCGGCCCAGGGCGAT CTGGCCAAGGTGCAGGCGCAACTGATCAACGCTCAGGCCAATGCCCGGCGGCAGCAGGCGCTGTTCGATCGCGGCGTGGGCGCCCAGGCACAACTGGACA TCGCCACCACCGACCTGAAAACCACCCAGGCTTCGCTCGATCAGGCGCGGGCGGCGGTCAACCAGAGCAAGGATCAGCTCGGCTACACCGAACTGCGCGC CGACCACAAAGCCGTGGTCACGGCATGGAATGCCGAGGCCGGCCAAGTGGTAACTGCCGGCCAGCAAGTGGTGACCCTGGCGCAACCGGACATCAAGGAA GCGGTGATCGACCTGCCGGATACGCTGGTCGATCAGATCCCCGCCGACGTGGTGTTTCTGGTGGCCGCGCAGCTCGACCCGAGCATCAGCACCACGGCGA TCATTCGCGAAATCGAACCCCAGGCACAGAGCGCCACGCGTACCCGTCGCGCCCGCCTGACCCTGAGCGAAACCCCGCCCGGGTTTCGTCTCGGCACGGC GATCAGCGTGACCCTCAGCTCGGCCATCAAGTCGCGGATCGAATTGCCCGCGACGGCGTTGCAGGAAGTCGACGGCAAGACCCGCATCTGGGTCATCGAC CCCCAGAGCAAAACCGTCTCCCCCCGTGACGTCAGCGTGACCAGCCGCACTGACAGCACCGTGGTGCTGGCCGGCGGGGTCAAGAGTGGTGAGCAGGTGG TCAGCGCAGGCGTCAACAGCCTCAAACCCGGACAAGCCGTGAAACTCGACGAGGACAGTCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGCTCTTTCAATCTCTCCGAATGGGCCCTCAAGCATCAGTCGTTCGTCTGGTACCTGATGTTCGTCGCGCTGCTGATGGGGGTGTTTTCCTACTTCAA TCTGGGGCGCGAAGAAGACCCGTCGTTCACCATCAAGACCATGGTGATCCAGACCAAGTGGCCGGGCGCGACCCAGGAAGAAACCCTCAAGCAGGTCACC GACCGCATCGAGAAAAAACTTGAGGAACTTGACTCCCTCGATTACGTGAAAAGCTACACGCGGCCCGGTGAATCGACGGTCTACGTGTACCTGCGCGACA CCACCAGCGCCAAGGACATTCCGGAGATCTGGTACCAGGTGCGCAAGAAGATCGATGACATTCGCGGGCAGTTTCCCCAAGGGATTCAGGGACCCGGATT CAACGATGAGTTCGGTGACGTCTACGGCTCGGTCTACGCCTTTACTGCCGATGGCCTGACCATGCGCCAGTTGCGCGACTACGTGGAACAGGCCCGCGCC
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| Amino Acid Sequence |
>RND transporter
MKRLGLLSIGVLLAACSKSEPPPEPVRPVLSIKVQALNEETLGRFAGSIQARYESNTGFRVGGRIASRNVDVGAEVDKGTLLATLDPTDQQNQLRSAQGD LAKVQAQLINAQANARRQQALFDRGVGAQAQLDIATTDLKTTQASLDQARAAVNQSKDQLGYTELRADHKAVVTAWNAEAGQVVTAGQQVVTLAQPDIKE AVIDLPDTLVDQIPADVVFLVAAQLDPSISTTAIIREIEPQAQSATRTRRARLTLSETPPGFRLGTAISVTLSSAIKSRIELPATALQEVDGKTRIWVID PQSKTVSPRDVSVTSRTDSTVVLAGGVKSGEQVVSAGVNSLKPGQAVKLDEDSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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