Pseudomonas fluorescens R124, I1A_000068 (rsmB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCAAGGTCGTGACCCCGATCAGCGCCGACGACACGGGCGGCACGCTGCACGACCGTCTCGCCGAAATGGGCCCGCCCGCCGTGGTCCAGGCGATTGCCG GCCTGGCCGCCGGAACCCTCGAAGGCGAAGTGCAGAACGACGAACTCGCCACCTACGCCCACAAACTGAACAAGGACGAAGCGCGCCTCGACTGGAGCCG TCCGGCGGTTGAGCTGGAGCGTCTGGTACGCGCCTTCAATCCATGGCCGATTACCCACAGCACCCTCAACGGTGAAGCGCTGAAAGTGCTGGCCGCGACC CTGGCTGACGGCAAAGGCGCGCCGGGTGCAATCCTCAGCGCCAGCAAGGACGGCCTGATCGTCGCGTGCGGTGAGCAGGCGTTGTGCCTGACCCGTCTGC AACTGCCCGGCGGCAAGGCGCTGAACTTCAGCGACCTGTTCAACAGCCGTCGCGAGAAATTCGCCGTCGGTACCGTGCTCGGCGCCGTGGTGGACGCGCA
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| DNA Sequence for Gene |
>I1A_000068
|rsmB
ATGAACCCGCGTCTGGCTGCCGCCAAGGCACTCGCTGCCGTCCTCAGCGGCAAGGCTTCGTTGAACAGCTCCCTGCCGACGCAACTGGACAAGGTCGAAG ACCGTGATCGCGGCTTCACCCAGGATCTGGCGTTCGGCACCGCGCGCTGGCAGCCACGGCTGTCGGCGCTGGCGGAAAAGCTTCTGCAGAAGCCGTTCAA GGCTGCCGACGCCGATGTCGAGGCGCTGCTGCTGGTCGGTCTCTATCAACTGCTCTACACCCGCGTGCCGCCGCACGCGGCCATCGGCGAAACCGTCGGT TGCGCCGACAAGCTGAAAAAACCGTGGGCCAAGGGTCTGCTCAACGCCGTGCTGCGTAATGCCCAGCGCGAAAGCGAGACGATTTTTGCCGAACTGGAGC GCGATCCGGTGGTGCGCACCGCCCACCCGCGCTGGCTGCAAAAATCCCTGAAAGCCTTCTGGCCGGAGCAATGGGAAGCGATCTGCGCCGCGAACAACGC GCACCCGCCGATGATCCTGCGGGTCAACCGCCGACATCACAGCCGCGACGCCTACCTCGGCTTGCTCAGCGACGCCGGCATCGCTGCCACGCCCTGCGTC TATAGCCGCGACGGCATCGTCCTTGAAGCCGCCGCCGACGTGCGCAGCCTGCCGGGTTTTGCCGAAGGCTGGATCAGTGTGCAGGACGAGGCCGCGCAAC TGGCCGCCGATCTGCTCGATCTGGCCCCGGGCCAGCGAGTGCTCGACGCCTGCTGCGCCCCCGGCGGCAAGACCTGCCACATCCTTGAAGCCGAACCGGC GCTGGCCGGCGTGGTGGCGGTGGATCTGGAAGCCAAACGTCTGGTGCGCGTAAAGGAGAACCTTGAGCGGCTGGGCCTGAGCGCCGAACTGATCGCTGCC GACGGTCGCGATACCGCCGCGTGGTGGGACGGCAAACCGTTCCAGCGCATCCTGCTCGACGCGCCATGCTCGGCCACCGGCGTGATCCGCCGCCATCCGG ATATCAAGCTAACCCGTCAGGCCGACGACATCGCCGCCCTCGCGCTGCTGCAAGGCGAGCTCCTCGACGCCCTGTGGAAAACCCTCGAAGTCGGCGGCAT CCTGCTCTACGCCACTTGCTCGACCTTGCCCACCGAGAACACCGAAGTCATTGCCGCGTTCCTTGAGCGCACGCCCGGTGCCCGCGAGCTGGATCTGGCC ACCACGGCCGGGATCAAACAGCCCCATGGTCGCCAATTGCTGGCCCAGCAGGGCGGGCATGACGGGTTCTACTACGCCAAGCTGATCAAGATCGCTGCCG CGCGCGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGATTCAATGGAGTGACTGGATGAAAATCATCATCCTCGGTGCGGGGCAGGTCGGCGGTTCGCTGGCTGAACACCTGGCGAGCGAAGCCAACGACATC ACCGTGGTCGACACCGACGGCGAGCGCCTGCGCGACCTCGGCGACCGCCTCGACATCCGCACCATTCAGGGCCGCGGCTCGCTGCCGTCGGTGCTGCGCC AGGCCGGCGCCGACGATGCTGACATGCTGGTGGCGGTGACCAACAGCGACGAGACCAACATGGTCGCCTGCCAGGTCGCGCACACGCTGTTCCACACCCC GACCAAAATCGCCCGGGTGCGCGAAGCGTCCTACCTCAATCGCGAAGAACAGCTGTTCCAGAACGAAGCGATTCCGGTCGACGTGCTGATCAGCCCCGAG CAGGTGGTGACCAACTACATCAAACGCCTGATCCAACATCCAGGCGCGCTGCAAGTGATCGACTTCGCTGAAGGTCAGGCGCAACTGGTGGCGGTGCGCG
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| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEDRDRGFTQDLAFGTARWQPRLSALAEKLLQKPFKAADADVEALLLVGLYQLLYTRVPPHAAIGETVG CADKLKKPWAKGLLNAVLRNAQRESETIFAELERDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHHSRDAYLGLLSDAGIAATPCV YSRDGIVLEAAADVRSLPGFAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVKENLERLGLSAELIAA DGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALALLQGELLDALWKTLEVGGILLYATCSTLPTENTEVIAAFLERTPGARELDLA TTAGIKQPHGRQLLAQQGGHDGFYYAKLIKIAAARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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