Pseudomonas psychrotolerans L19, PPL19_19372 (clpP)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas psychrotolerans L19 contig00012, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTCCCGGCTGCCCTGATCAGCAACGAAGTGGATCGTCTGCGCGTGCAGGCCGTCCAGCAGTTCGGCGGCAACATCCAGCCCGAGCAGCTGCCGGCCGA GCTGTTCAGCGAGCAGGCCAAGCGCCGCGTGCTGCTGGGTCTGATCATCGCCGAGATGGTCAAGCAGTTCGAGCTCAAGCCCGATGACGCCCGCGTTCGC GAGCTGATCGAAGAGATGGCGGCGGCCTACCAGGAGCCCGAGCAGGTAGTGAAGTGGTACTACCAGAACGAGCAGCAGCTGAACGAAGTGCGTTCGGTTG TACTGGAAGAACAAGTCGTGGATACTGTCCTCAAGCAGGCAAAAGTCACCGACAAGCAGGTCTCCTACGAGGACGCGGTCAAACCGGCCGAGGCTCCGCA AGCAGCCTGATCTGCCTCCAGTTGCTAGTTCACATAAGCCAGCCTCGTGCTGGCTTATGTGTTTTTGACAGGTCATCCAGATAGGGAGCTAGTGCAGGAC
|
|
| DNA Sequence for Gene |
>PPL19_19372
|clpP
ATGTCCCGCAATTCATACATGCAATCCATGCCCGATATTCAAGCCGCTGGCGGTCTGGTACCCATGGTGGTGGAGCAATCCGCCCGGGGCGAGCGCGCTT ACGACATCTACTCCCGGCTGCTCAAGGAGCGGGTCATCTTCCTGGTCGGCCAGGTCGAGGACTACATGGCCAACCTGGTCGTCGCCCAGCTGCTGTTCCT GGAAGCGGAGAATCCTGACAAGGACATCCACCTCTATATCAACAGCCCGGGTGGTTCGGTGACCGCCGGCATGTCGATCTACGACACCATGCAGTTCATC AAGCCCGACGTTTCCACCATCTGCATCGGCCAGGCCTGCAGCATGGGCGCCCTGCTGCTGGCAGGTGGCGCCGCCGAGAAGCGTTTCTGCCTGCCGCACT CGCGGATGATGATTCATCAGCCCCTGGGCGGTTTCCAGGGTCAGGCCTCGGACATCGAAATTCACGCCCGTGAAATTCTGACCATCCGCGAGCGTCTGAA TAAGGTGCTGGCGCATCACACCGGTCAGCCGATGGACGTGATCGCCCGCGATACCGACCGTGACAACTTCATGAGTGGCCCCGAAGCCGTCGCCTACGGC CTGATCGACAAGGTCCTCGAGAAGCGCAACATCCCCGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCCGCCTCGACCACCTGCCCAGGCGCCGGTCGTTTGGGCAGGTAGGCTTGAAAAACCGTGCAATAGGCTCCATCTTGTTGATGTAAGCACATTCCATTG GATCGATCGAATGACAGATACGCGCAATAGCGACGATAACGGCAAGCTGCTTTACTGCTCCTTCTGCGGCAAGAGTCAGCACGAAGTACGTAAATTGATC GCTGGACCCTCCGTCTTCATCTGCGACGAATGCGTCGACCTGTGCAATGACATCATCCGCGAGGAAGTCCAGGAAGCTCAGGCCGAAAGCAATGCGCACA AGCTGCCAGCGCCGAAGGAAATCAGCGCCATCCTCGACCAGTATGTCATTGGTCAGCAGCGTGCCAAGCGGGTCCTCGCCGTTGCCGTCTACAACCATTA CAAGCGTCTGAATCAGCGCGAGAAGAAAGACGACGTCGAACTGGGCAAGAGCAACATCCTGCTCATCGGTCCGACCGGTTCGGGCAAGACCCTGCTGGCG
|
|
| Amino Acid Sequence |
>ATP-dependent Clp protease proteolytic subunit
MSRNSYMQSMPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGQVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFI KPDVSTICIGQACSMGALLLAGGAAEKRFCLPHSRMMIHQPLGGFQGQASDIEIHAREILTIRERLNKVLAHHTGQPMDVIARDTDRDNFMSGPEAVAYG LIDKVLEKRNIPA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|