Pseudomonas psychrotolerans L19, PPL19_17414 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas psychrotolerans L19 contig00009, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGAGCGCCGCCGGCAAGGTGGGCGTGGCCAACCTGGTGATGCACTCCAAGCAGCACCTGGCGGTGATCATGCCGCTGGGCGACGCCCTGGTGCTCAACA CCCTGCGCTGGGCCGACGAGGTGCGGTCCGCGGAAGACGTCGGACTCGAGGGGCTGGACGCCAAGGTCAGCAAGAAGGAAGTGGACATGGCCCAGCGCCT GGTGGACGACATGACCGAGCAATGGGACCCGGAGCAGTACCACGACACCTTCAAGGACAACGTCATGGCGCTGGTGGAGCGCAAGCTCAAGGACGGCAAG CTCGAAGCCGTTGCCGAGGAGCCCGAAGCCGAGGACAGCGGCGCCGACGTCATCGACCTCACCGAATTGCTGCGTCGCAGCCTGGGCGGCAAGAAGGACA AGGCCAAGGACGCGCCCAAGTCCAAGAGCCCCGGCCGTTCGACCACCCGGCGTAGCCCTGCCGCCAGTCGCACCCGCAAGGCCAAGTGAGGAGCGCCGCC
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| DNA Sequence for Gene |
>PPL19_17414
|ligD
ATGGCCAGCTCGACCAGCGAATACAACCGCAAGCGCAACTTCGACATCACCGCCGAGCCGCGTGACGAGGGCAGCTCCCGCCGGCGCAAGGCCAAGGGGG CCCTGAGCTTCGTCATCCAGAAGCACGACGCGCGCCGCCTGCACTATGACTTCCGCCTGGAGCTGGATGGCACCCTCAAGAGCTGGGCGGTGCCCAAGGG TCCCAGCCTCGATCCCGGCGAAAAGCGCCTGGCGGTGCAGGTGGAGGACCACCCCCTCGCCTACGGCAGCTTCGAAGGCAGCATTCCCGAAGGCCAGTAC GGCGCCGGCGATGTCATCGTCTGGGATCGTGGCGAGTGGGAGGCGGATGGCGATGCCGCCGAAGGCTATGCCACGGGCAAGCTCAAGTTCGAACTCAGGG GCGAAAAGCTGCGCGGCCACTGGACCCTGGTGCGCACCCGGCTGCAGGGCCACAGCGACAAGCCGCAGTGGCTCTTGATCAAGGAACGCGATGACCAGGC CCGTGACACCGCCGACTACGAGGTGACCGTCGCCGAGCCGGACAGCGTGCTGAGCGACAAGACCCTGCCCCGGCTGGCGCAGTCCAAGGCCAAGTCCAAG AGCAAAACCACCACCGAACCCAAGGCGACCAAATCGCCGGCACGCCAGGCCACCGCCAAGGCGCGCAAGGCCAAGCTGCCCGAAATCCTGGAAGCCCAGC TGGCCACCCTGGTCGACAGTCCGCCGGCCGGCGACTGGCTGTACGAGGTGAAATACGACGGCTATCGGCTGCTCGCCCATATCGAGGGCGGCGAGGTGCG CCTCTTCACCCGCAGCGGCAACGACTGGACCGAGCGCCTGCCAGAGCAGGCCAGGGCCCTGGCCGCGCTGGGCCTGGAAAACGCCTGGCTGGACGGCGAG ATCGTGGTCAACGACGCCCAGGGCGTCTCCAGCTTCCAGGCGCTGCAGAATGCCTTCGAGACCGGCAAGGCGACCCGCATCACCTATTACCTGTTCGACC TGCCCTATCTCAATGGCGCGGACCTGCGCGAGGTGCCGGTCGAGCAACGCCGCGAGTTGCTCGGCAAGCTGCTGGAAGAGAGCAACGACAGCGAGCTGCT GCGCTTCTCCGCCGCCTTCGAGGTGCCGGCCGATCGCATCCTGGCCAGTGCCTGCGAACTCGGGCTCGAAGGGGTCATCGGCAAGCGCCTGGGCAGTCCC TACCGTTCGCGGCGCAACAAGGACTGGATCAAGCTCAAATGCGCCCACCGCCAGGAATTCATCATCGTCGGCTATACCCCGCCCAAGGGCGGCCGCCAGC ACCTGGGTGCGCTGCTGGTGGCGCTGCACGATGACCAGGGCCAGCTGCACTATGCCGGCAAGGTCGGTACCGGCTTCACCGCGGTCGTGCTCAAGCAGCT GCACGCTCGCTTCCAGCCGCTGATCGTCGATCAGCCGCCGGTGGTGGATCCGCCCAAGGGCGCCGCCTATAGCGAAGTGACCTGGCTGCGGCCCGAGCAG CTGTGCGAGATCGCCTATGCCGAGCTGACCCAGGACCGCATCGTCCGCCAGGGCGTCTTCCACGGCCTGCGCGACGACAAGCCGGCCGAGGGCATCGGCC TGGAAGAGGCGACACCAGCCCGCGAGGCCGAGGCGCCGCGCCCGTCCGCCGCACGCCGCCCGTCTGCGGGCAAGCAGCAGGACGCCACCGTCGCCGGGGT GCGCATCAGCCATCCCGAACGGGTCATCGACGAGGCCAGCGGCGCACGCAAGCTCGACATTGCGGGCTATTACGCCGCCGTCGCCGATTGGATCCTGCCG CATCTGGCCGACCGACCCGTGGCCCTGGTCCGGACGCCCGAGGGTATCGCCGGCGAGCAGATCTTCCAGAAGCACAAGCAGACCCTGGCGATCCCCCATA TCCGCGAACTCGATCCGGCGCTGGATCCGGGGCATGCGCCGCTGATGGTCATCGACAGTCGCGAGGCCCTCATCGGCGCGGCCCAGATGGGCACGGTGGA ACTCCATACCTGGAACGCCACCGCCGACCGCATCGACCGGCCCGACCGCTTCATTCTCGATCTCGACCCTGATCCCGCCCTGCCTTGGTCGCGCATGCTG GAGGCGACGGGGCTGGTGCTGACCCTGCTCGACGAGCTGGAGCTGCAGGCCTTCGTCAAGACCAGCGGCGGTCGCGGCCTGCACCTGGTGGTGCCGCTGG ATCGGCGCCAGGACTGGGACACCGTCAAGGCCTTCGCCCAGGCGGCGGCCCAGCACCTAGCCAACACCCTGCCCAAGCTCTTCGCCGCCAAGATGGGCGC CCAGAATCGCCAGGGGAAGATCTTCGTCGACTACCTGCGCAATCGCCATGGCGCCACCACGGTCAGCGCCCTTTCCCTGCGCGCCCGTCCCCACCTCGGC GTTTCGGTACCCATCGCCCGGGATGAGCTGGCGACCCTGGAGGCCAGCGACCAATGGCGCTTCGACTCCCTGCTGGAACGCCTCGAAGGGCTCAAGGACG ACCCCTGGGCCGGGTATGCCGAGATACGCCAGAGCCTTACCGCAGCGCGGCGCAAGCGGCTCGGCGTAGCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGATGCGCCTGCCGTCGGCAAGCGTACCGCCTAAGCGAAACCCCTTATCGCTGCCCGTGGTCTGCACTAACGAGCGCTGTCGTGGACAGCGCCGTCGCCA GCCACGGGATGGAGCCGATGTCGATCGATCTGGATAGCCTCCAGGACACCCTGGACGAGTGGGCCTATGACGAGGTCACTCCCGCACTGCTGCAACACCG ACTCCAGATTCTCAACCAGCGCGGTCTCGACCGCCTGCCGTTGCCCGGCCAGGGTCAGACCCTGGACCGTTGGCGCGCCCTGGCCCAGGTCGCCCATCAT GACCTGGGCCTGGTCAAGCTTTACGAAGGCCACACCGATGCCCTGGCCATCCTGAGCGAACTGGAGGGCTACGCGCCGCCCGAAAGCCTCTGGGGCGTCT GGGCCGCCGAGCCGCCCGATGCCCGCCTGCTGGTGCGCTACAGCGCCGACGGCGTGGTCACCCTGCACGGCCGGAAGTCCTGGTGCTCCGGCGCCTCCCT
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MASSTSEYNRKRNFDITAEPRDEGSSRRRKAKGALSFVIQKHDARRLHYDFRLELDGTLKSWAVPKGPSLDPGEKRLAVQVEDHPLAYGSFEGSIPEGQY GAGDVIVWDRGEWEADGDAAEGYATGKLKFELRGEKLRGHWTLVRTRLQGHSDKPQWLLIKERDDQARDTADYEVTVAEPDSVLSDKTLPRLAQSKAKSK SKTTTEPKATKSPARQATAKARKAKLPEILEAQLATLVDSPPAGDWLYEVKYDGYRLLAHIEGGEVRLFTRSGNDWTERLPEQARALAALGLENAWLDGE IVVNDAQGVSSFQALQNAFETGKATRITYYLFDLPYLNGADLREVPVEQRRELLGKLLEESNDSELLRFSAAFEVPADRILASACELGLEGVIGKRLGSP YRSRRNKDWIKLKCAHRQEFIIVGYTPPKGGRQHLGALLVALHDDQGQLHYAGKVGTGFTAVVLKQLHARFQPLIVDQPPVVDPPKGAAYSEVTWLRPEQ LCEIAYAELTQDRIVRQGVFHGLRDDKPAEGIGLEEATPAREAEAPRPSAARRPSAGKQQDATVAGVRISHPERVIDEASGARKLDIAGYYAAVADWILP HLADRPVALVRTPEGIAGEQIFQKHKQTLAIPHIRELDPALDPGHAPLMVIDSREALIGAAQMGTVELHTWNATADRIDRPDRFILDLDPDPALPWSRML EATGLVLTLLDELELQAFVKTSGGRGLHLVVPLDRRQDWDTVKAFAQAAAQHLANTLPKLFAAKMGAQNRQGKIFVDYLRNRHGATTVSALSLRARPHLG VSVPIARDELATLEASDQWRFDSLLERLEGLKDDPWAGYAEIRQSLTAARRKRLGVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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