Pseudomonas psychrotolerans L19, PPL19_14165
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas psychrotolerans L19 contig00006, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGGCTTGCTCTGGTAGGCCCATTGCTGGCTGCCGTCGTCGCGAGTGACCAGGCTGTAGCCATCGGCAGCCTTGGCGCCCGCTTCGGCTGTCAGCGGTG GCCAGTTCTGGGCACAGGGACCGTTGCAAGCGGACTTGCCCGCGCTGTCCTTGGCGAAGGTGTAGAGCGTCATGCCCTTGCCGTCGACGAGCACCTTGCC CAGGGCGGTGTCGGCGACCTTGGTCGGCGCGGCGGCCAGGGCCAGGCTGGCGAAGGAGAGGGTTGCAGCGGTGATCAGCAGGTGTTTCAGCATGGTCGAC CTCTTGTGCTTGTTATCAGGGCGAACGGAGCCACGGCTACTTGGGCATCTGCAAAGCCGGGGATGCCTTGCGCACTCTAGTCGAAATCCTGCCGTCCGGG GCCGGCGCAGCGCCGGGTATCCGCGACGGCCATCGCTCCGGCGGCGCGGCCCCCCGTGCTAACCTTGCCGCCGTTCAATCTGCAGCGGAGCCCGCCTGTC
|
|
| DNA Sequence for Gene |
>PPL19_14165
ATGCATATCCACATCCTCGGTATCTGCGGCACCTTCATGGGGTCGCTCGCGGTGCTGGCCAAGGAAGCCGGCCATCGCGTGACCGGCTCCGACGCCAACG TCTATCCGCCCATGAGCACCCAGCTGGAAGCCCAGGGCATCGAGCTGACCCAGGGCTACGATCCAGCCCAACTCGATCCGGCACCGGACCTGGTGGTGAT CGGCAACGCCCTGTCGCGCGGCAATCCGACGGTGGAATACGTGCTGGATAAGGGCCTGCCCTATGTCTCCGGTCCCCAGTGGCTGGCCGAGCACGTCCTG CAGGGCCGCTGGGTGCTGGCGGTCGCCGGCACCCATGGCAAGACCACCACCACCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGTCCGGGCT TTCTCATCGGCGGGGTGCCACAGAATTTCGGCATCTCGGCGCGCCTGGGCGGCACGCCCTTCTTCGTGGTGGAAGCCGACGAATACGACAGCGCCTTCTT CGACAAGAGATCCAAGTTCGTCCACTACCGGCCGCGAACCACCATCCTCAACAATCTGGAATACGATCACGCGGACATCTTCCCGGATCTGGCGGCCATC GAGCGGCAGTTCCACCATCTGGTGCGGACCATCCCCAGCAGCGGCCTGATCATCCACCCCACCGCCGAAACGGCCCTGGTGCGGGTGCTGGAGATGGGCT GCTGGACCCCGGTGCAGACCACTGGCGCAGGTGGTCAGTGGCAGGCCCGCCTGCTGGCCGAGGACGGCTCGCGCTTCGAGGTGCTGTTCGACGGCGCGGT GCAGGGCACGGTGAACTGGGAATTGACCGGCCAGCACAACGTGGCCAATGCCCTGGCCACCCTGGCCGCGGCTCGTCACGTTGGCGTGGTACCGAGCCTG GGCGTCGCCGCCCTGAGCGCATTCCGCAGCGTGAAGCGGCGCATGGAAAAGGTCGCCGAGGTGCGCGGCGTGACCGTCTACGACGACTTCGCCCACCATC CCACCGCCATCGCCACCACCCTGCAGGGCCTGCGTGCCCGGGTCGGCAGCGAGCGGATCATCGCCGTCATCGAGCCGCGCTCCAATTCCATGAAGCTGGG CGCCCATCGTGACGGCCTGCCGGCCAGCGTCACCGGCGCCGACAGCGTCATCTGGTACGCCCCGCCGAATCTGGGCTGGGACCTGGCCGGCACCGCCGAG GCCTGCGCCGTACCGGCCGTGGTCTGCGATTCCCTGGAGGCGATCATCACCCGGGTCCAGGCCGAGCTGGACGGCCCCACCCACGTGGTGATCATGAGCA ACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGCCGCCCTGGAGCAGGCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGCCGGCCCGGAACGCATCACCCTGGCGCTGACCGGCGCCTCCGGCTCCCAGTACGGCCTGCGCCTGCTGGACTGCCTGGTACAGGAGGAGCGCGAGGT GCACTTCCTCATCTCCAAGGCCGCGCAGCTGGTGATGGCCACCGAGACCGACGTGGTGCTGCCGCCCAAGCCCCAGGCCATGCAGGCCTTTCTCACCGAA TACACCGGCGCGGCGCCGGGCCAGGTGCGGGTGTTCGGTCAGAGCGACTGGATGGCGCCGCCGGCGTCCGGTTCCAGCGCCCCGGCGGCCATGGTGGTCT GCCCCTGTTCCACCGGCACCCTCTCGGCCATCGCCACCGGGGCCAGCAACAACCTCATCGAGCGCGCCGCCGACGTGGCCCTCAAGGAGCGGCGACAACT GATCCTGGTGCCGCGCGAGTCGCCGTTTTCCAGCATCCACCTGGAAAACATGCTCAAGCTGTCCAACCTGGGCGTGACCATCCTGCCAGCCTCGCCGGGC
|
|
| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKEAGHRVTGSDANVYPPMSTQLEAQGIELTQGYDPAQLDPAPDLVVIGNALSRGNPTVEYVLDKGLPYVSGPQWLAEHVL QGRWVLAVAGTHGKTTTTSMLAWVLEHAGMSPGFLIGGVPQNFGISARLGGTPFFVVEADEYDSAFFDKRSKFVHYRPRTTILNNLEYDHADIFPDLAAI ERQFHHLVRTIPSSGLIIHPTAETALVRVLEMGCWTPVQTTGAGGQWQARLLAEDGSRFEVLFDGAVQGTVNWELTGQHNVANALATLAAARHVGVVPSL GVAALSAFRSVKRRMEKVAEVRGVTVYDDFAHHPTAIATTLQGLRARVGSERIIAVIEPRSNSMKLGAHRDGLPASVTGADSVIWYAPPNLGWDLAGTAE ACAVPAVVCDSLEAIITRVQAELDGPTHVVIMSNGGFGGLHGKLAAALEQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|