Pseudomonas psychrotolerans L19, PPL19_13260

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 82 102 -
Pfam PF00672 HAMP domain IPR003660 HAMP domain 198 245 3.3E-9
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 282 311 9.6E-8
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 10 529 9.8E-107
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 201 529 7.2E-89
Gene3D G3DSA:1.10.287.950 - - - 245 530 2.6E-63
SMART SM00304 HAMP_11 IPR003660 HAMP domain 288 348 14.0
Gene3D G3DSA:1.10.8.500 HAMP domain in histidine kinase - - 200 244 1.5E-8
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 268 529 3.1E-70
CDD cd11386 MCP_signal - - 295 493 4.64079E-47
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 224 529 1.06E-69
CDD cd06225 HAMP - - 204 246 8.70163E-6
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 395 424 9.6E-8
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 314 495 2.1E-40
SMART SM00304 HAMP_11 IPR003660 HAMP domain 201 253 2.0E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.