Pseudomonas psychrotolerans L19, PPL19_10852
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas psychrotolerans L19 contig00004, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTCACCCTTTGAGTGACCGCAGGGTCACGGCCAGCGCCGTGGCTTGCGGCCCTGTTTTGCCCTCATCAGCGACCCATGAGTCAGCAATAGACGCCCCA AACCCGCTCCCGGCCGCATCTACGACTTTTGTAGTGACTATACGAAAGCACTACAAAACTGAGTTGACGACGCCCTTATCTCCTGCAAATCTCTAGCTGC ACCGGACGCGAACCCCCTATCCATGCGGGTCGCGCCTGGGCTCCGGGTGACCCTCGGGCCGTCTTGCGTAGTGATGCTCAAGAGGCACTACAAGAGAAGA CGACTGAAATGCCGCGCTGCTCGAGGCAGCGTCGCCAGAGGTGACGTCCGGATCCATGCAGGAACGTACGGCGACATGACTCGACAGCTGGGCTGACCTT TCGCCTTCGCGACCGGTATCCGGGTGGCAACCGCCATCCCGCTGCCGGACGTTGGGAAAAGACTGGTACCCAAGCCAACCTCATCGAGAAGGATCGACTC
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| DNA Sequence for Gene |
>PPL19_10852
ATGTCCGCTTACGAGAACGACGTTCAGGCCATCGCCGCCCTCAAGAACAGCACCGGCAATCACTGGAGCGCCATCAATCCGGAGTACGCAGCGAGGATGC GCCTGCAGAATCGCTTCAAGACCGGTCTCGACATCGCCCGCCACTGCGCGGCCATCATGCGCCGGGACATGGCCGCCTACGACGCCGACAGCAGCGCCTA CACCCAGTCGCTGGGCTGCTGGCACGGCTTCATCGGGCAGCAGAAGCTGATCGCCATCAAGAAGCACCTGGGCAGCACGAAAGGCCGCTACCTCTATCTG TCCGGCTGGATGATCGCCGCGCTGCGTTCGGAATTCGGCCCGCTGCCGGATCAGTCCATGCACGAGAAGACCAGCGTGCCGGCACTGATCGAAGAGCTCT ATACCTTCCTGCGCCAGGCCGATGCCCGCGAGCTGGGCATGCTGTTCCGCGAGCTGGACGCCGCCCGCGCCGCCGACGAGAACGCCAAGGCCGCCGCCAT CCAGGCCAAGATCGACAACCATGAAACCCATGTGGTGCCGATCATCGCCGACATCGACGCCGGGTTCGGCAACGCCGAGGCCACCTACCTCCTGGCCAAG AAGATGATCGAGGCCGGCGCCTGCTGCATCCAGCTGGAAAACCAGGTCTCCGACGAGAAGCAGTGCGGCCACCAGGACGGCAAGGTCACGGTGCCCCACG AGGACTTCCTGGCCAAGATCAACGCCGTGCGCTACGCCTTCCTCGAACTGGGCGTGGACGAGGGCGTCATCGTCGCCCGCACCGACTCCCTGGGCGCCGG CCTGACCAAGCAGATCGCTGTGAGCAAGCAGCCGGGCGACCTGGGCGACCAGTACAACGGCTTCCTCGACTGCGACGAGGTGGACGCCAGCCAGTTGGGC AACGGCGATGTGCTGATCAGCCGCGGCGGCAAGCTGCTGCGGCCCAAGCGCCTGGCCAGCGGCCTGTTCCAGTTCCGTGCCGGCAGCGGTGTGGATCGCG TGGTGCTGGACTGCATCACCTCGCTGCAGAACGGCGCCGACCTGCTGTGGATCGAGACCGAGAAGCCCCACGTCGGCCAGATCAAGGCCATGGTCGACCG CATCCGCGAGGTCGTGCCCAACGCCAAGCTGGTCTACAACAACAGCCCCTCCTTCAACTGGACCCTGAGCTTCCGCCAGCAGGTGTTCGACGCCCTGCAG GCCGAGGGCAAGGACGTCTCCGCCTACGACCGCGCCAAGCTGATGAGCGAGGACTACGACGACACCGAACTGGGGCGCCTGGCCGATGTGCGGATCCAGA GCTTCCAGCGCGATGCGGCACGGGAGGCGGGCATCTTCCACCACCTGATCACCCTGCCCACCTACCACACCGCGGCCCTGTCCACCGACAACCTGGCCAA GGGCTATTTCGCCGAGGAAGGCATGCTGGCCTACGTCAAGGGCGTGCAGCGCCAGGAGATCCGCCAGGGCATCGCCTGCGTCAAACACCAGAACATGGCC GGCTCGGACATGGGCGACGACCACAAGGAATACTTTGCCGGGGAAGCCGCGCTCAAGGCGGCGGGCAAGGACAACACCATGAACCAGTTCCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACGGCCACTGCGGAGGACACGCTCATGAACCTGAACGACAACCCCAGCCTGGACGATCTCAAGCAACTCTTCGGCCGGCTCAAGGACAAGAACCACAA CCACATCCTCTGGGTCTGCGAGAGCGGGGCGGTGCACGTCGACCGCCTGCCCGGCGGCGAGACGCCCGAGCAGTTCGAAGAGCGCCATCCCAGCCTGCGC ATCCGCTTCAAGACCTACAACAAGGGCGGCGGCTACGTCGGCAAGTCGGCGGCGGCGGACGACAACTTCATCAGGAGCGTCCACACCGCCCTGCAGGAGC ACTGGCGCCTGGCCGGTCGGCAGCAGCAGCCGGCCTATGTGGATCGCTACTGCTAGCCATGAAAAAGGGCGCGGCGGGTAGCTGACCACCCGCCGCGCCC TGCCCCACCTTCGAGGCGACTCGCCTGATCCTGGATGGCCCTCCCGGATCGAGCGAGTCGCCTCTTCCGTTTACAGCACGAACAGGTCCACGAAGCGATG
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| Amino Acid Sequence |
>isocitrate lyase
MSAYENDVQAIAALKNSTGNHWSAINPEYAARMRLQNRFKTGLDIARHCAAIMRRDMAAYDADSSAYTQSLGCWHGFIGQQKLIAIKKHLGSTKGRYLYL SGWMIAALRSEFGPLPDQSMHEKTSVPALIEELYTFLRQADARELGMLFRELDAARAADENAKAAAIQAKIDNHETHVVPIIADIDAGFGNAEATYLLAK KMIEAGACCIQLENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGVDEGVIVARTDSLGAGLTKQIAVSKQPGDLGDQYNGFLDCDEVDASQLG NGDVLISRGGKLLRPKRLASGLFQFRAGSGVDRVVLDCITSLQNGADLLWIETEKPHVGQIKAMVDRIREVVPNAKLVYNNSPSFNWTLSFRQQVFDALQ AEGKDVSAYDRAKLMSEDYDDTELGRLADVRIQSFQRDAAREAGIFHHLITLPTYHTAALSTDNLAKGYFAEEGMLAYVKGVQRQEIRQGIACVKHQNMA GSDMGDDHKEYFAGEAALKAAGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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