Pseudomonas psychrotolerans L19, PPL19_04405

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas psychrotolerans L19 contig00002, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGCCAGGAGATCATGCTGAAGGTGCTTTACGGTTTGAAGAATTTCGAGGGGAAATCGAAATTCAAGACCTGGCTGTACAGCATCACCTACAACGAGTGC ATCACTCAGTACCGCAAGGAACGCCGCAAGCGGCGGCTGGTGGAGGCATTAAGTCTGGACCCGATGGAGGAAGCCTCCGAGGAAAGGGCGCCGAAGCTGG AAGAAAAAGGAGGGATGGATCGCTGGCTGGTCCATGTGGGTCAGGTCGATCGGGAGATCCTGGTGCTGCGCTTCGTCGCAGAGCTGGAGTTCCAGGAGAT CGCCGACATCATGCACATGGGTCTCAGCGCCACCAAGATGCGATACAAGCGGGCACTCGACAAACTGCGTGACAAGTTCGCAGCTGAAGTTGAGGGCTGA CCGGATGTGTCAGCCGTAAGTTTTTGAACTTCACGAAAACTTGTTGTCCAAGCCTCCGGAGATTGCCGGAATTAGTACCACTAAAATGGGGATACAAAGG
DNA Sequence for Gene
>PPL19_04405
ATGAAACTGAAGAGCACCTTGGGCGTCGTGATCGGCTCCCTGCTGGCAAGCGCCTCGCTGAGCGCCCTGGCACAAGGTCAAGGCGCCGTCGAGACCGAGC TGTTCGGCAGCCGTCTGTTCACCGACAGCCAGCGCAACATGACCAACGCTGACCTGTACGGCGGTTCCGTTGGCTACTTCCTGACCGACGACGTTGAGCT GGCGTTGTCCTACGGTGAGTACCACAACGCCCGTGGCGACCACGACCTGGGCCACAAGAACATCAAGGGCAGCCTGGCCGCTCTGGACGCCTACTACCAC TTCGGTCAGCCCGGCGTCGGCCTGCGTCCGTACGTATCCGGTGGCTTCGCTCACCAGTCCATCAGCAACCGCGACATCAACGAAGGTGGTCGTGATCACT CCACCTACGCCAACCTGGGTGCCGGCCTGAAGTACTACTTCACCGAGAACCTGTATGCCCGTACCGGCGTACAAGCCAACTACAACATCGACTACGGCGA CACCGAGTGGAGCGCTGCTGTAGGTGTTGGTCTGAACTTCGGTGGTTCCACCAAGAAAGAAGTCGCTCCGGCTCCGGCTCCGGCCCCCGTTGCTGACGTC TGCACCGATTCCGACAACGACGGCGTCTGCGACAACGTCGACAAGTGCCCGAACACCCCGGCCAACGTCACCGTTGACGCTACCGGCTGCCCGGCTGCTG CCGAAACCGTTCGCGTCGAGCTGGACGTGAAGTTCGATTTCGACAAGGCCGTGGTCAAGCCCAACAGCTACGCCGACATCAAGAACCTGGCTGACTTCAT GCAGCAGTACCCGCAGACCTCGACTACCGTTGAAGGCCACACCGACTCCGTCGGCACCGACGCCTACAACCAGAAGCTGTCCGAGCGTCGTGCCAATGCC GTGCGTAACGTCCTGGTCAACCAGTACGGCGTGCAGGGTAGCCGCGTGAACGCTGTTGGTTACGGCGAGTCCCGCCCGGTTGCTGACAACGCCACCGAAG CCGGTCGCGCTGTGAACCGTCGCGTAGAAGCCGAAGTCGAAGCTCAGGCCAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCCGCCTGATACAGACTCCAAAAAAGCCCGCCTAGTGCGGGCTTTTTCATGACTGGCGTTCCGGGTTTCAGGCCCAGATCCGAGCTTCGCAGGCAAAAAA AACCCCGCCGAGGCGGGGTTCTTCCTGACGGATCGATCAGCCGCGATCGTCCGGGATGTCGCGCTGGGCGACGCCGGTGTACAGCTGACGCGGCCGGCCG ATCTTGTAGGGCCCGGACAGCATTTCCTGCCAGTGCGAGATCCAGCCGACGGTCCGCGCCATGGCGAAGATCACGGTGAACATGCTGGTCGGGATGCCGA TCGCCTTGAGGATGATGCCGGAATAGAAGTCCACGTTCGGGTAGAGGTTGCGCTCGACGAAGTAGGGGTCCTTGCGGGCCAGTTCTTCCAGGCGCATGGC CAGTTCCAGCTGCGGATCGTTGATACCCAGTTCGGCCAGGACTTCGTCGCAGGTCTGCTTCATCACCGTGGCGCGCGGATCGAAGTTCTTGTAGACGCGA
Amino Acid Sequence
>porin
MKLKSTLGVVIGSLLASASLSALAQGQGAVETELFGSRLFTDSQRNMTNADLYGGSVGYFLTDDVELALSYGEYHNARGDHDLGHKNIKGSLAALDAYYH FGQPGVGLRPYVSGGFAHQSISNRDINEGGRDHSTYANLGAGLKYYFTENLYARTGVQANYNIDYGDTEWSAAVGVGLNFGGSTKKEVAPAPAPAPVADV CTDSDNDGVCDNVDKCPNTPANVTVDATGCPAAAETVRVELDVKFDFDKAVVKPNSYADIKNLADFMQQYPQTSTTVEGHTDSVGTDAYNQKLSERRANA VRNVLVNQYGVQGSRVNAVGYGESRPVADNATEAGRAVNRRVEAEVEAQAK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site