Pseudomonas psychrotolerans L19, PPL19_04240 (cobD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas psychrotolerans L19 contig00002, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGGGCTGATGCAGCCCTGGCGCTTTCTGCGCATCAGCGATCCGGCCTTGCGCCAGCGCCTGCACGAACTGGTGGAGGAGGAGCGCTGCGCCACCGCCG ACGCCCTTGGCGAGCGCAGCGACGACTTCATGAAGCTCAAGGTGCAGGGCATCCTCGACTGCGCCGAGGTACTGGTGGCGGCGCTCATGGATGGTCGCGA AGCCCATGTCTTCGGCCGCCGTACCCTGCCGGAAATGGACCTCGCCTCGCTGTCCTGCGCCATCCAGAATCTCTGGCTGGCAGCGCGCTGCGAGGGCCTG GGCATGGGCTGGGTGTCGCTGTTCGAACCGGCAGCGGTACGCAGCCTGCTGGAGATGCCGGAAGGCTCCCAGCCGGCGGCCATCCTCTGCCTGGGACCGG TGGAAGCCTTCTACCCGCGACCCATGCTGGAAGAGGAGGGCTGGCGTCAGGGGCGGCCACTGGAGGAACTGGTCTTCGAGAATCGCTGGGGCCAGAAGCC
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| DNA Sequence for Gene |
>PPL19_04240
|cobD
ATGATGCTGGCCTTCGCGGTCGTCGGCGGCATGCTGCTCGACCTGTTGTTCGGCGAGCCCCGCCGTGCCCATCCCCTGGTCCTGTTCGGCCGCCTGGCCG ACAGCCTGGAAGCGCGCTTCAATCCTGGCGGCCGCGGTTGGCGCAGTCATGGGGTGATGGCCTGGAGTCTGGCCGTGTTGCCCTGGGTACTGCTCACCGC CTTGCTCTGCCAGATCGGCTGGCTGGCCTGGATCATCCAGCCGCTGGCGCTGTATCTGGCGGTGGGGTTGCGCAGCCTCGGCGAGCACGCCGAACCGGTG GCGCGCGCCTTGCAGCGCAACAACCTGCCCGAGGCGCGGCGCCGGGTCGGCTATCTGGTCAGTCGCGAAACCACTGAGCTGGACGAAACCGCCGTGGCCC GCGCCGCCACTGAATCGGTGCTGGAAAATGGCAGCGATGCCGTCTTCGCCGCGCTGTTCTGGTTCGCCCTGCTCGGTGCCCCGGGCGTTGTGCTCTATCG CCTGGCCAATACCCTGGACGCCATGTGGGGCTATCGCACGCCGCACCTGGAGCGCTTCGGCTGGGCCGCGGCGCGGCTGGACGATGTCCTCAACTATATC CCCGCGCGCCTGGTGGCCCTGACCTATGCCTGTCTCGGCCGCTTCTGGAGCGCCATCGAAAGCTGGCGGACCCAGGCGCCGTTGTGGGACAGCCCCAATG CCGGCCCGGTAATGGCGGCCGGTGCCGGCGCCCTGGGCGTGAGCCTGGGCGGCCCAGCCCGCTATCACGGCAAATGGCACGAGCGCCCGGTGCTGGGCCG CGGTCCGGCGCCAACCTTCCTGGCCATCACCCGCGCCCTGAAACTGGTCCGCCGTGGCGCCTGGCTGTGGACCGCGCTGATCGCCCTGGGAGGACTGCTG CTTGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGGCGGTCGCCTGAGGCGCGCGGCGCGCCGCTACGACATCCCCCTGGCCGACTGGCTGGACCTGTCCACCGGCCTGGCCCCCTGGCCCTGGCCATTG CCGGAGATTCCCGCCAGCGCCTGGGCACGGCTGCCCGAGCCTGACGACGGCCTGGTGGAAGCCGCCTGCGCCTGCTACAGGGCCTGCGCGGCACTGCCGG TGGCCGGCTCCCAGGCCGCCATCCAAGCGCTGCCGACCCTGCGCCCAGCCGCGCGGGTCGCGGTGCTGGCGCCCTGTTATGCCGAGCATGCCCTGGCCTG GCGTCGCGCCTGGCACGAGGTGCTGGAGTGGGACGAGACAGGCATCGCGACCCACCTCGACCAGCTGGATGTGGTGGTGGTGGTCAACCCCAACAACCCT ACGGGCGAGCGCCTGTCGCCCGCCCGGCTGCTGGACTGGCACGCCCGGCTCGAACGCCGCGGCGGCTGGCTGGTGGTGGACGAGGCCTTCATGGATCCCA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MMLAFAVVGGMLLDLLFGEPRRAHPLVLFGRLADSLEARFNPGGRGWRSHGVMAWSLAVLPWVLLTALLCQIGWLAWIIQPLALYLAVGLRSLGEHAEPV ARALQRNNLPEARRRVGYLVSRETTELDETAVARAATESVLENGSDAVFAALFWFALLGAPGVVLYRLANTLDAMWGYRTPHLERFGWAAARLDDVLNYI PARLVALTYACLGRFWSAIESWRTQAPLWDSPNAGPVMAAGAGALGVSLGGPARYHGKWHERPVLGRGPAPTFLAITRALKLVRRGAWLWTALIALGGLL LA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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