Pseudomonas psychrotolerans L19, PPL19_02910
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas psychrotolerans L19 contig00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGGTCCTCGATCTCTTCTCCGGCCTCGGCAACTTCGCCTTGCCGCTGGCGCGGCAGGCCGCGGCCGTCACCGGGATCGAAGGGGTCGCGGCGATGACA TCCCGGGCAATACAAAATGCGCGTGACAACGGCATCGGCAACGCGCACTTTCTACAGGTGGACCTGTCGAACCCGCTACCCGCCGATCTGGGCAGCCATT CGCTGGCGCTGCTGGATCCGCCGCGCGATGGTGCGCTGGAAGTGGTCCGGCAACTCAGCGGCCTGGGTATCGGGCGACTGGTCTATGTCTCCTGCAATCC GGCCACCCTGGCGCGGGACGCGGGAGAGCTGGTCCGACAGGGCTATCGCATGACAAGAGCGGGCATTCTCGACATGTTCCCGCAGACCGCCCATGTGGAA GCCATGGTGTTGTTCGAAGCGGGCGGGATGCCCGGGTAACGACGGCTCGCCAACCGATGCGAGCCAATCCGGCGAAGGCACCGCCGTGAGGAAGGGGTAG
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| DNA Sequence for Gene |
>PPL19_02910
ATGGTACAGGTCAGAGCGCATCAGCCAGTCAACGTCGATGGCAGCATCAACCTTCACGCCTGGCTGGATCACATCCAGAGCGTGGATCCGAATCTCGATC GCGAGACCTTGCTGGATGCCTGCGGCTTCGCCCGCACGGCGGAGGAGAATTCCGGCCAGGTCGAGCACACCTGGGCGGAGGGTACCTCCAGTTTCCACAC CGGGCTGGAGATGGCCGAGATCCTGGCCGATCTCAAACTGGATCAGGACAGCCTGATCGCGGCCATCGTCTACCGGGCGGTGCGCGAGGGCAAGGCGACC CTGGAGTCGGCCGCGGAGCATTTCGGGCCGGTGGTGGCCAAGCTGATCGAAGGCGTGCTGCGCATGGCGGCGATCAGCGAGAGTCTCAATCCGCGCAAGT CCATGGTGCTGGGCAGCCAGACCCAGGTCGACAACCTGCGGCGCATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCCCTGATCAAGCTGGCCGAGCG CACCTGCGCCATCCGTGCGGTCAAGAACGCCACCGAAGAACGCCGCAACCGGGTGGCTCGCGAGGTGGCCGACATCTATGCACCCCTGGCCCACCGCCTG GGCATTGGTCATATCAAGTGGGAGCTGGAGGACCTGTCCTTCCGTTACTTGGAGCCCCAGCAGTACAAGCAGATCGCGACCCTGCTGCACGAGCGGCGGC TGGATCGCGAGCAGTACATCGCCGATGTCATGCAGCAGCTGCGTGACGAACTCACCGCCACCGGTATCAAGTCCGACATCAGTGGTCGGGCCAAGCACAT CTATTCCATCTGGCGGAAGATGCAGCGCAAGGGCCTGGAGTTCAGCCAGATCTACGACGTGCGCGCGGTGCGGGTGCTGGTCCCCGAGGTGCGTGACTGC TACACCGCGCTGGGTATCGTGCATACCCTGTGGCGACACATTCCCCGCGAGTTCGACGATTATATCGCCAACCCAAAGGAGAACGGCTACCGTTCCCTGC ACACCGCGGTGATCGGTCCGGAGGGCAAGGTGCTGGAGGTGCAGATCCGCACCCACGCCATGCACGAAGAGGCCGAACTGGGGGTCTGCGCCCACTGGCG CTACAAGGGCACCGACGTCAAGTCGGCCTCCAACCACTACGAAGAGAAGATCTCCTGGCTGCGCCAGGTGCTGGAATGGCACGAAGAGCTGGGCGACATC GGCGGCCTGGCCGACCAGTTGCGGGTCGACATCGAGCCGGACCGGGTCTATGTCTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAGGGCGCGACGC CGTTGGACTTCGCCTACCGGGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCCAAGATCAACGGCCGCATCGTGCCGCTGAACTACCAGCTGCAGAC CGGCGAGCAGGTGGAAATCATCACCGGCAAGCAGGGCTCGCCCAGCCGCGACTGGCTCAACCCCAATCTCGGCTACGTCAACACCTCGCGGGCCCGGGCC AAGATCGTCCACTGGTTCAAATTCCAGGCGCGTGACCAGAACGTCGCCGCCGGCAAGGCCATGGTCGAGCGCGAGTTGTCGCGCCTGGCGCTGCCGCCGG TGGACTTCAATACCCTGGCCGAGAAGGTCAACTACAAGGGTGCCGAGGACATGCTGGCGGCCCTGGGCGCCGGTGACCTGCGCCTGGCCCATGTGATGCA CGCCGCCCAGCAGCTGGTGGAGCCGGACAAGGGCGTCGATACCCTCGATCTCCTGCCGCGCAAGCCGACCAACAAGCCGGGCAAGCGCGGCGATGTGCAA ATCCAGGGGGTGGGCAACCTGCTCACCCAGATCGCCGGCTGCTGCCAGCCGGTGCCGGGCGATGCCATCGTCGGCTACATCACCCTGGGGCGCGGCGTGA CCATCCACCGGCAGGACTGCGCCAACGCCCTGCAGCTGGCCAGTCGCGAGCCGGAACGGACCATCCAGGTGAGCTGGGGTCCGGTGCCGGTGCAGACCTA TCCGGTCGATATCGTCATCAAGGCCTTCGACCGCTCCGGTCTGTTGCGCGATGTCTCGCAGATCCTGCTCAACGAGCGGATCAACGTGCTGGCGGTGAAC ACCCGCTCCAATCGCGAGGAAAACACCGCCAACATGCTGCTGACCATCGAGATCCCCGGCCTGGACGCCCTCGGTCGTCTGCTCGGGCGAATCTCCCAGC TGCCCAACATCATCGAAGCCCGGCGCAATCGCGCCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGTGACGATGCCCCCCACGAGGCGCCTCCTGGCGCCTCGTTCTTTTTCCAGTGACAGGATTCACCCAATGTACAAGCTCGACGACCTGCTGCACCTC ATGGCCCGGTTGCGCGACCCCCAACACGGCTGCCCCTGGGACCTGCGCCAGGACTACGCCAGCATCGTGCCCCACACCCTGGAAGAGGCCTACGAGGTCG CCGACGCCATCGCCCGGCGAGATTTTCCGCAGCTGCGCGACGAGCTGGGCGATCTGCTATTCCAGGTCGTCTACTACAGCCAGTTGGGGCGCGAGGATGG CCATTTCGACTTTGCCCAGGTGGTAGATGGCATCACCCGCAAGCTGGTGCGGCGCCATCCCCATGTCTTTCCCGATGGCGACCTGCATGGCCCGCTGGAC CTGCCGCGGCTGGACGAGGCGACCATCAAGCGCCGCTGGGAAGAGATCAAGGCCGAGGAGCGCGCGGAAAAGGCCGCGGTGCCCGAGCAGCTGTCGCTGC
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MVQVRAHQPVNVDGSINLHAWLDHIQSVDPNLDRETLLDACGFARTAEENSGQVEHTWAEGTSSFHTGLEMAEILADLKLDQDSLIAAIVYRAVREGKAT LESAAEHFGPVVAKLIEGVLRMAAISESLNPRKSMVLGSQTQVDNLRRMLVAMVDDVRVALIKLAERTCAIRAVKNATEERRNRVAREVADIYAPLAHRL GIGHIKWELEDLSFRYLEPQQYKQIATLLHERRLDREQYIADVMQQLRDELTATGIKSDISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLVPEVRDC YTALGIVHTLWRHIPREFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAHWRYKGTDVKSASNHYEEKISWLRQVLEWHEELGDI GGLADQLRVDIEPDRVYVFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKINGRIVPLNYQLQTGEQVEIITGKQGSPSRDWLNPNLGYVNTSRARA KIVHWFKFQARDQNVAAGKAMVERELSRLALPPVDFNTLAEKVNYKGAEDMLAALGAGDLRLAHVMHAAQQLVEPDKGVDTLDLLPRKPTNKPGKRGDVQ IQGVGNLLTQIAGCCQPVPGDAIVGYITLGRGVTIHRQDCANALQLASREPERTIQVSWGPVPVQTYPVDIVIKAFDRSGLLRDVSQILLNERINVLAVN TRSNREENTANMLLTIEIPGLDALGRLLGRISQLPNIIEARRNRAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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