Pseudomonas psychrotolerans L19, PPL19_00150
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas psychrotolerans L19 contig00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGTGCTCGGCGTGCTCTACGAGAGCTACGTGCATCCCCTGACCATCCTCTCGACGCTGCCGTCGGCCGGGGTAGGGGCCTTGCTGGCCATCCAGCTCA CCGGTGGCCAGTTCAGCCTGATCTCCATGCTCGGGCTGTTCCTGCTGATCGGGGTGGTGAAAAAGAACGCCATCATGATGGTGGACCTGGCGCTGCAGCT GGAACGCCAGCAGGGCCTGACGCCCGAGGAAGGCATCCGCCAGGCCTGCCTGTTGCGCCTGAGGCCCATCCTCATGACCACCATGGCCGCCATCCTCGGC GCCGTGCCGCTGCTGATCGGCGATACCGAGGGCGCCGAGATGCGCCAGCCGCTGGGCCTGGTGATCGTCGGCGGCCTGGTGCTGAGCCAGATCCTCACCC TATACACCACCCCGGTGGTCTATCTCTATTTCGAACGCCTGCGCCGCCGCGTCAATCGCTGGCGCGGCATCCGTACCGACGCTGCCCTGGATACGCCGCT
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| DNA Sequence for Gene |
>PPL19_00150
ATGACCCCAATCCTGCGCCTGCCGACGCTGACCCTGGCTCTGCTGCTGGCCGGCTGTACCCTGGGCCCGGACTACCAGCGGCCGACCACCACGGTGCCGG TCGCCTATCGCCACGCCGAAGGCTGGCAGGCGGCCGCGCCCAAGGATCTGGAGATCCGTGGCGACTGGTGGCGGCGCTATGACGATCCGACCCTCGACCG CCTGATGGTCCAGCTCAACCAGCGCAACCAGAGCCTGGCCCAGGCCGAGGCGACCTATAGACAATCCTTGGCCCTGGTCAGCCAGGCGCGGGCGTCGCTG TTCCCGACCCTGTCCAGCAGCCTGGGCGCCACCCGCTCCGGGCGCGGGGGCGGTTCCGGCAGCAACACCGTCATCCGCAACTCCAATGGCACCAGCAGCA CCTTCAGCAGCGGTGGCTCCAGCACCATCAGCAACGCCTACGACGCCAGCCTGGGAGTGAGCTGGGAGCTGGATCTTTGGGGTCGCGTGCGGCGCCAGGT GGAGGCGGATCGGGCCTCTGCCCAGGCCAGCGCCGCGGAGCTCGCGGCCACCCGCCTGAGCCTGCAGACGCAACTGGCGACCAACTACCTGCAACTGCGC GTACTGGACGCCCAGCAGCGCCTGCTCGACGCCACCGTAGCCGCCTACGAGCGATCCCTGCGCCTGACCCAGAACCAGTACCGCGCCGGCATCGTCACCC CGGCGGATGTGGCCCAGGCCACCACCCAGCTGAAGAGCACCCAGGCCGACGCCATCGACCTCAGGTATCAGCGTGCCCAGTTGGAAAACGCCATCGCGGT GCTGGTCGGCGAAGTTCCGGCCAATTTCCAGCTGGCTGCGGTCAAGACGATTCCCGAGTTGCCGCCGCTGCCGAGCGCCGTGCCCTCGACGCTGCTGGAG CGGCGTCCGGACATCGCCCAGGCCGAACGCCAGGTCATGGCCGCCAATGCCGCCATCGGCGTCGCCGAAGCCGCCTACTATCCCGACCTGACCCTGAGCG CCAGCGGCGGCTACAGCGCCAGCCAGTGGGGCAGCCTGATCAGCACGCCGAATCGCTTCTGGTCGATCGGGCCGTCCTTTGCCCTGTCGCTGTTCGATGG CGGCCTGAGACGCGCCCAGGTGGAGTCCGCCGAGGCCAGCTACGACGCCAGCGTCGCCGGCTATCGCCAGACCGTGCTGGATGGCTTCCGCGAGGTGGAA GACTATCTGGTGCAGCTGCGCACCTACGGCGACGAAGCCGGCGTGCGCCAGGAGGCGCTGGATGCCGCGCGCCGCGCCCTGCAACTGGCCGAGAACCAGT ACCAGGCCGGCCTGATCGGCTATCTCGACGTGGTCACCCTGCAGACCACCGCCCTGAGCAACGAGCGCACCAACCTGACCCTGCTCGGCAGTCGCCTCAG CACCAGCGTCCAGCTGATCGCCGCGCTCGGCGGTGGCTGGGATGGCAATCTCACGCCGCCCGCACCGCCGCGGCGGCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCGGGCACAAAAAAGCCACGCAGATTCTAGATTGGCGAGGCTGCGGGCGCGCTAACGGTCGAGGCACTACGGCCGATCGCGGATGTGCCGGAGCAGAT GGAGCTGAACGCCTGCGTGGATAGCCCCCTCGCCCCGCGGGAGAGGGGTGGGGTGAGGGGGCCTTTGCCGCGAAGTCTCCAGTGGAAAAGGCTGCGCCGT TTTCCACGCTACTGCACGGGATGGCAACATCACGCGTCCGGCGGCCCTGACGGCGGGCACAAAAAAGCCGGGCGATGGCCCGGCTTTTTCACGACTGGCG CTTAGTTGGGGAAGAGTTCGCCCAGCTTCATGCTCAGCATCATGTTGCCTTCGACGCGCAGCTTGCCGGACATGAAGGCCTGCATGCCGTCGGTTTCGCC GCTGACGATACCGGCCAGGGTAGCCTGGTCCATGATCAGGGTGCAATCCGGGTCGGCGGCGTCGCCCTGCTGGACGTCGCAGGTGCCGTCCTTGACGACC
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| Amino Acid Sequence |
>RND transporter
MTPILRLPTLTLALLLAGCTLGPDYQRPTTTVPVAYRHAEGWQAAAPKDLEIRGDWWRRYDDPTLDRLMVQLNQRNQSLAQAEATYRQSLALVSQARASL FPTLSSSLGATRSGRGGGSGSNTVIRNSNGTSSTFSSGGSSTISNAYDASLGVSWELDLWGRVRRQVEADRASAQASAAELAATRLSLQTQLATNYLQLR VLDAQQRLLDATVAAYERSLRLTQNQYRAGIVTPADVAQATTQLKSTQADAIDLRYQRAQLENAIAVLVGEVPANFQLAAVKTIPELPPLPSAVPSTLLE RRPDIAQAERQVMAANAAIGVAEAAYYPDLTLSASGGYSASQWGSLISTPNRFWSIGPSFALSLFDGGLRRAQVESAEASYDASVAGYRQTVLDGFREVE DYLVQLRTYGDEAGVRQEALDAARRALQLAENQYQAGLIGYLDVVTLQTTALSNERTNLTLLGSRLSTSVQLIAALGGGWDGNLTPPAPPRRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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