Strain | Pseudomonas stutzeri B1SMN1 contig00024, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TGGCTGGTCAAGAAGTCCGACGGCAGCCTGGGTCTGGCCAGCACCATCGGTGCCGGCAACCCGATGACCGCAGGCGACAAGCCGCTGCTGACCTGCGATG TCTGGGAGCACGCCTACTACATCGACTACCGCAACGCCCGTCCGAAGTTTGTCGAAGCGTTCTGGAACCTGGTGAACTGGGACTTCGTCGCGAAGAACTT CGCAGGCTAAGCCCAAGCCCCAGCAGTGAATCAAAATGCCCGCGCTCATGCGGGCATTTTCATTTAAGGCTCGGGCACGGCCTGCCGCTATAAAGATGCA GGGCAGGACGCCGTAGCGCTACTGCATGCGCGCCCGATGTGCAATGTTCCCTTCGGATGACGGGTCGCGCTTGCATCACGCAAGGCACTGCCTGCACAGT CGCCGCTGCTGACTTACCGGTGTAAATTGCCTCTTTGACGATTGCAGAATGACTATCAATACTTCCGCAACCGCGCGTCGGCACGGAAAAGGACCTTCAT
|
|
DNA Sequence for Gene |
>B382_22706
TTGAAGCTGGAAATGCGCAATAGCCTGTCACGGAAGCTCCTGCGTGTAGTCCTGCTATCGGCGCTGGCGGTAGGGCTGGTGCTCAGCTGCGCGCAGATCA TCTTCGGCGCCTACAAGACGCGCCAGCTGATCGAGGCCGATGCCCAGCGCATCCTGCGCATGACGCGCGATCCTTCCACCCAGGCCATCTACAGCCTGGA TCGGGAAATGGGTGCGCAGGTGATGGAAGGCCTGTTCCAGCACGAATCGATTCGCATGGCCTCGATCGGCCACCCGGACGAAGGCATGCTGGCACTGAAG ATCCGCCCGCCCATCAGCCTGCCGACCCGCTGGCTGACCGACCCGATCCTTCACCAGGATCGCCAGTTCTCCATTCCGCTGATCGGCAAGCCGCCCTACA ACGAGTATTACGGCGAACTGCGGATCACCCTGGACACGGCCAAGTACGGCCAGGAATTCGTCAACGATTCCATCGTCATCTTCATCGTCGGCATTCTGCG CGCCCTCACCCTGGGGCTGGTGCTCTTCCTGATCTACCAGTGGCTGCTGACCCGCCCGCTGACCAAGCTCATCGAGCACCTGGCACAGATCAATCCGGAC CGCCCCGGCGAGCACAAACTGCCGATGATCCGAGGGCATGAGCGCAACGAGCTGGGCCTCTGGGTGGAAACCGCCAACGGCCTGCTGGCCTCCATCGAAC ACAACATGCACCTGCGCCAGGAAGCCGAGAGCAGCCTGCATCGCATGACCCAGTACGACTCCCTGACCGGCCTGCCCAACCGGCAGCAGCTGCAAAGCCA GCTGGACCATATCCTCGACGAGGCGCGCCGCCTGCAGCGACGGGTCGCCGTACTCTGCCTGGGGCTCGACGACTTCAAGGGCATCAACGAGCAGTACAGC TACCAGGCAGGCGACTGCCTGCTCAAGGGGTTGGCGGATCGCCTGCGCGAATCGGCGGGTCGCCTGGGCGCACTGGCGCGGCTGGGCGGTGACCAGTTCG TGTTGGTGCTCAGCGGCATCGAACAACCCTATGAGGCTGCCGAACTGGCCCAGGCCGTGCTCGACGACCTGGATAATCCGATCGACCTGGACGGCCACCC GATTCGTCTGCGCGCCACGATCGGCATCACGCTGTACCCCGAGGATGGCGACAATACCGAGAAGCTGCTGCAAAAGGCCGAGCAGACCATGACGCTGGCC AAGAGCCGCTCACGCAACCGCTATCAGTTCTACGTCGCCAGCATCGACAGCCAGATGCGTGCGCGGCGGGAGCTGGAGAAGGATCTCAGCGAAGCCCTCA AGCGCAACGAGTTCCACCTGGTCTATCAGCCGCAGGTCGACTACCGGCAGAACCGCATCACCGGGGTCGAGGCGCTGATTCGCTGGAAACATCCGCAAGG CAAGCTGGTACCGCCGGACCTGTTCATACCTCTGGCCGAGCAGAACGGCAGCATCATCGAAATCGGCAAGTGGGTGCTCGACCAGGCCTGCAGCCAGCTG CGCCAGTGGCACGCGCAGGGCCATACCGGACTGCGTGTGGCGGTGAACCTGTCCACCGTGCAGCTGCGTCATCCGCAGCTGCCAGCCATGATCGGCGAGC TGCTGCAGGCCCATCAGTTGCCCGCCGAGACCCTCGAACTGGAGGTCACCGAGACCGGCCTGATGGAAGATATCGACGCGGCGGCGCACAACCTGCACAG CCTGCGACGCTCCGGCGCGCTGATCGCCATCGACGACTTCGGCACCGGCTATTCCTCGCTGAGCTATCTGAAAAGCCTGCCACTGGACAAGATCAAGATC GACAAGAGCTTCGTGCAGGACATCAGTCAGGACGAGGGCGCAACCATCGTCCGGGCGATCATCCAGCTGGGCAAGAGCCTCGGCATGACCGTGATCGCGG AAGGCGTCGAAACTCCTGAGCAGGAAGCCTACCTGATCGCCGAAGGCTGCCAGGAAGGCCAGGGCTACTATTACAGCAAGCCCCTGCCGGCGCGGGATCT CGACCTGCTGCTGCGCCAGTCGGCGCCCTTCGATCGAGCGGGCAACTCCGAGCTGCGCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TCGCGCGGCCACTTTGGCATGCAGCGCCCAAAGCGCTGGCCAGCGCCAGCGACTTGCGCCACACTCGGCGCCCTTCTGGCCCATCGCGGCCGACGACGAG CCGCCCATGAAACGCTTCGTACTGCTGGATACCGCCGCCATTCCCGCCGGGGGCGCCTTGTGTCTGTTCGAATATGGCGACGATTTCGTCATCAAGATCC AGGGTGGCAACGGTAACCAGCTGATGAACACTCGCACGCACGGCTCGGAAGACGCGCTGGCGGAAATCCCCTGCAAACGGATCGCCAGCCGAGCGCAGGT TCGAGTACTGATCGGCGGGCTGGGGATGGGCTTTACCCTCGCCTCGGCCCTGCGCCAGCTGGGCGCGGACGCCGAGGTACTGGTCGCCGAGCTGGTGCCC GGGGTCATCGAATGGAACCGCGGCGCGCTCGGCGAGAAGTCCGGCCATCCGCTGCGCGATGCCCGCACCCGGGTACTGAACCAGGATGTTGCCGAGCTGC
|
|
Amino Acid Sequence |
>diguanylate cyclase
MKLEMRNSLSRKLLRVVLLSALAVGLVLSCAQIIFGAYKTRQLIEADAQRILRMTRDPSTQAIYSLDREMGAQVMEGLFQHESIRMASIGHPDEGMLALK IRPPISLPTRWLTDPILHQDRQFSIPLIGKPPYNEYYGELRITLDTAKYGQEFVNDSIVIFIVGILRALTLGLVLFLIYQWLLTRPLTKLIEHLAQINPD RPGEHKLPMIRGHERNELGLWVETANGLLASIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQSQLDHILDEARRLQRRVAVLCLGLDDFKGINEQYS YQAGDCLLKGLADRLRESAGRLGALARLGGDQFVLVLSGIEQPYEAAELAQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNTEKLLQKAEQTMTLA KSRSRNRYQFYVASIDSQMRARRELEKDLSEALKRNEFHLVYQPQVDYRQNRITGVEALIRWKHPQGKLVPPDLFIPLAEQNGSIIEIGKWVLDQACSQL RQWHAQGHTGLRVAVNLSTVQLRHPQLPAMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLHSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDISQDEGATIVRAIIQLGKSLGMTVIAEGVETPEQEAYLIAEGCQEGQGYYYSKPLPARDLDLLLRQSAPFDRAGNSELR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|