Pseudomonas stutzeri B1SMN1, B382_13498
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri B1SMN1 contig00008, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTGGATGTTCTCGACTGAACCACTGCTGGCGCGCAGAAGAATGTAGTGGCCTAAAAAAAACACTACAAAACCATTGACGGTGGAAAAACAGCGGCGCAT TATTGGCCCGCTCCCGCTAACCAGGGGCCCTGGCAAGGGTCTCCGGGGCGTGCTCCAGCCAACCAGCCGAGCCGTTCCGTGACTGTACTGCCCACAAGGC GGACTGACGAGGTTGCGACTGGAACGAGTCGTCCCGAGGGACGGGGTAGCGATTGACGCATCAGCCAGCCTGACCAGCTTCTCGTTGTTGTAGCGCACAC GGCAGCCACGCCGGCTGTGGGCGCAGCAACCGGAACCAGCCAGCCCGGCGGTCGTATCCCCCCCTTCCCCTTGGTTCAATCCTCGTCCCGGTCGATATTT CGACGCTCTGCCGCGTGTTGCCCGCACTGATCAGCGATAGCACGTAGGTTCGGTGGGAAAAAGTCGGTGCTCAACCACACTTATTTTTGAAGGATTGAAC
|
|
| DNA Sequence for Gene |
>B382_13498
ATGTCCGCATATCAAGACGACATCAAGGCAGTTGCCGCCCTGAAAGAGCAATACGGCAGCAGCTGGGCCGCCATCAACCCTGAGTCCGTCGCTCGCATGC GCGCCCAGAACCGCTTCAAGACCGGTCTGGAAATCGCTCAGTACACCGCCGACATCATGCGCAAGGACATGGCCGAGTACGACGCCGACTCGTCCGTCTA CACGCAGTCCCTCGGCTGCTGGCACGGCTTCATCGGTCAGCAGAAGCTGATCTCCATCAAGAAGCACCTGAAGACCACCAACAAGCGCTACCTCTACCTG TCCGGCTGGATGGTCGCTGCTCTGCGTTCCGAGTTCGGCCCGCTGCCGGACCAGTCCATGCACGAGAAGACTGCCGTTTCCGACCTGATCGAAGAGCTGT ACACCTTCCTGCGTCAGGCTGACAGCCGCGAGCTGGACCTGCTGTTCACCGCTCTGGACGCCGCTCGCGAAGCCGGCGATCAGGCCAAGGCTGCCGAGAT CCAGAACCAGATCGACAACTACGAAACCCACATCGTACCGATCATCGCCGACATCGACGCTGGCTTCGGTAACCCGGAAGCCACCTACCTGCTGGCCAAG CGCATGATCGAAGCAGGCGCTTGCTGCATCCAGATCGAGAACCAGGTTTCCGACGAGAAGCAGTGCGGCCACCAGGACGGTAAAGTAACCGTTCCGCACG CCGACTTCCTCGCCAAGATCGCTGCCGTTCGTTACGCCTTCCTCGAGCTGGGCATCGACAACGGCGTGATCGTTGCTCGTACCGACTCCCTGGGTGCCGG CCTGACCAAGCAGATCGCCGTGACCAAAGAGCCGGGCGACCTGGGCGACCTGTACAACTCCTTCCTGGATTGCGAAGAAATCTCCGAAGCCGAGCTGGGC AATGGCGACGTCGTAATCAAGCGCGAAGGCAAGCTGCTGCGTCCGAAGCGTCTGCCGTCCAACCTGTTCCAGTTCCGCGCTGGCACCGGCGAAGACCGCT GCGTTCTGGACTGCATCACCTCGCTGCAGAACGGCGCCGACCTGCTGTGGATCGAAACCGAGAAGCCGCACGTTGGCCAGATCAAGGCCATGGTTGACCG CATCCGCGAAGTCATCCCGAACGCCAAGCTGGTCTACAACAACAGCCCGTCCTTCAACTGGACGCTGAACTTCCGTCAGCAGGTGTTCGACGCTTTCGTT GCCGAAGGCAAGGACGTGTCCGCCTACGACCGCGCCAAGCTGATGAGCGTCGAGTACGACGAAACCGAGCTGGCCCAGGTTGCAGACGAGAAGATCCGCA CCTTCCAGCGCGACGGTTCGGCTCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCACACTGCTGCTCTGTCGACCGACAACCTGGCCAA GGGCTACTTTGCCGACCAGGGCATGCTGGCCTACGTTAAGGGCGTTCAGCGCGAGGAACTGCGTCAGGGTATCGCCTGCGTCAAGCACCAGAACATGGCT GGCTCTGACATCGGCGACAACCACAAGGAGTACTTCGCTGGCGAAGCTGCTCTGAAGGCAAGCGGCAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GAACAGGTTCGCAGCCGCCCCGGCTGCGGTGTGAAAAAAGCCCTGGCGTGAGCCGGGGCTTTTTTCTGCGACGGATTGAGTGGTGCACGGTTACGCTTCG TCGGTCAGCGCTCAACTGTCATTCTCTTGTCGCATACGAACCTTAGCGTCATGGCTCCGACAACAATCGTTATGGAGCTGCGCCGTGATTACTGAGAACA ACGACATTCTGTTCGGCAACGGGGACGAGTTGCCCAGTAACCATTCGACGAATCCGCATATCCAGGATGTGATTTCCCTTGGCCGACGTAAAGTGCTCGC GGGTGGCGCAGCCATGGGTGCCCTGGCCTTTCTTGGCGCATCCCTTCCCGGCCTCGCGCAAGCGGCGGAGCCAATGTCCCGCGGGATCAAGGATGTTCCG TTCAAACGTCGTACCCGCCTGCCGTTCGTGCCGGTGGCCGTTACCCGTGCCGACACCATAACCGTGCCGTCAGGCTATACCGCCACCACCTTCATCCCTT
|
|
| Amino Acid Sequence |
>isocitrate lyase
MSAYQDDIKAVAALKEQYGSSWAAINPESVARMRAQNRFKTGLEIAQYTADIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSEFGPLPDQSMHEKTAVSDLIEELYTFLRQADSRELDLLFTALDAAREAGDQAKAAEIQNQIDNYETHIVPIIADIDAGFGNPEATYLLAK RMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHADFLAKIAAVRYAFLELGIDNGVIVARTDSLGAGLTKQIAVTKEPGDLGDLYNSFLDCEEISEAELG NGDVVIKREGKLLRPKRLPSNLFQFRAGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKAMVDRIREVIPNAKLVYNNSPSFNWTLNFRQQVFDAFV AEGKDVSAYDRAKLMSVEYDETELAQVADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQREELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|