Pseudomonas stutzeri B1SMN1, B382_11071
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri B1SMN1 contig00006, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGTCGAAGAACATCTTCACCAAGCCTGCGTTCTGCGTCGCCATCGCCACCATCACCCGATGCAGGCCAATGGATTCTGGGCTGTTGACCAGCTCATG GAAGGCACGGCCGATCTCCAGCAGCAGCTTCTCGATGTCGCAATCGGCCTCCACCTGAAACAGGCGCCTCGGCAGTCGCGTTTCGCAGGTGGCTTTCACC GCGGCGCAGAACAGCGCTTCCTTGTCCTTGAAATGACTGTACAGCGTGAGCTTGGAGACACCGGCTTCGCTGGCGATGGCCTCCATGCTGCTGCCTTCGT AGCCGTTGCCGAGGAACAAGACTTGCGCCGCAGCAAGGATCGCCTCGCGCTTGGCAGGGTCCTTCGGGCGGCCGGGGCCGGGCGAGGGTGAATGATTCTC TATCATGGGCGTTTTAATACTGGACTGGCTGGTACGCTATTTTTACTATACCGCGCAGTATAAGTATTCCAATCCGCTTCGCGACAGAGAGACCTTCATC
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| DNA Sequence for Gene |
>B382_11071
GTGTTCCGACATGTCCTGTCCTTCGCCTCCGTGCTTGGCTTAGCGCTCACTCTGACCGCCTGTGGTAACGGCGAGCCGCCGCAGCAACTGCCGCGGCCGG TCATGGTCGTGCATCCGCAACCGGCCAGCGAAGCGCGCGAGAGCTACCCCGGCGAAGTGCACGCGCGCTACGAGCCTGAACTGGCCTTCCGCATCGGCGG CAAGGTCGTCGAACGCCTGGTCGAAGCGGGCGACCGTGTGCGCAAGGACCAGCCTCTGGCACGCCTCGATCCGCAGGACGTGCGCCTGCAGCTGGACGGC ATGCGTGCCCAGGTGGCCGCAGCGGAAGCCAACCTGCGGGTGGCCAAGGCGGAGTACGACCGCTATCAGGCGCTGCTCGGTCGTCAGCTGGTCAGCCAGT CGCAGTTCGACAATGCCGACAATGCCTACCGCGCCGCGACCGCCCGACTGCAGCAGGCGCGGGCTGAGTTCGACGTGGCCAGCAACCAGGTCGATTATGC GGTGCTGCGGGCCACCCGCGATGGGCTGATCGCCCAGCGCCGCATCGAGGTCGGCCAGGTGGTGGCGGCCGGTCAGACGGCCTTCGTGCTGGCGGCCGAT GGTGAGCGCGAGGTCGCCATCGACCTGCCGGAGCAGTCGCTGGAGCGCTACCGGGTCGGTCAGGAAGTGGAGGTCGAACTCTGGTCGCAGCCGGGCCGGC AATACCGCGGCCAGATTCGCGAGCTTTCACCGGCGGCCGACGCGCAGTCGCGGACCTATTCCGCCCGCGTCGCCTTTACCGAACAGGAAGTGCCCGCCGA ACTGGGGCAGAGCGCGCTGGTGAGCATCCGCCGTGACGGCGACGTTGCGCTGGCGGTGCCGCTCTCCGCACTCAGCGCCGAACAGGGCAGGGCGTACGTC TGGCGGCTCAGACCCGACTCCACCGTGGAGCGTGTCGAGGTCCGTACCGGTGCGTTCGGTGAGCAGCTGGTGCCGGTGCTTGATGGGCTCGCTGCCGATG ACTGGATCGTGCTGGCCGGAGGGCAGATGCTCAGCGACAACCAGCCGGTGCGGCCGGTGGATCGCCACAACCGCCCCGTCGAGCTGGCTGCCCAGGAGTA A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCGATGCGCTTCAATCTTTCCGCCTGGGCGCTGCAGAACCGACAAATCGTCGTCTACCTGATGCTGCTGCTGGCCCTCGTCGGTGCGCTGTCCTACAG CAAGCTCGGGCAGAGCGAGGATCCGCCGTTCACCTTCAAGGCCATGGTCATCCAGACTCAGTGGCCTGGCGCGACGGCCGAAGAGGTTTCACGCCAGGTC ACCGAACGCATCGAGAAGAAGCTGATGGAGACCGGCGAGTACGAGCGCATCGTCTCCTTCTCACGGCCGGGCGAGTCCAACGTCACCTTCATGGCGCGCG ACTCGATGCGCTCGAAGGACATTCCCGACCTCTGGTACCAGATACGCAAGAAGATCGGCGACATTCGCCACACGCTGCCCCCGGGCGTACAGGGACCGTT CTTCAATGACGAGTTCGGCACTACCTTCGGCAACATCTACGCGCTGACTGGCGAAGGGTTCGATTACGCGATCCTCAAGGACTATGCCGACCGCATTCAG
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| Amino Acid Sequence |
>RND efflux membrane fusion protein
MFRHVLSFASVLGLALTLTACGNGEPPQQLPRPVMVVHPQPASEARESYPGEVHARYEPELAFRIGGKVVERLVEAGDRVRKDQPLARLDPQDVRLQLDG MRAQVAAAEANLRVAKAEYDRYQALLGRQLVSQSQFDNADNAYRAATARLQQARAEFDVASNQVDYAVLRATRDGLIAQRRIEVGQVVAAGQTAFVLAAD GEREVAIDLPEQSLERYRVGQEVEVELWSQPGRQYRGQIRELSPAADAQSRTYSARVAFTEQEVPAELGQSALVSIRRDGDVALAVPLSALSAEQGRAYV WRLRPDSTVERVEVRTGAFGEQLVPVLDGLAADDWIVLAGGQMLSDNQPVRPVDRHNRPVELAAQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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