Pseudomonas stutzeri B1SMN1, B382_05957 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri B1SMN1 contig00003, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTGCGGCCCTGATTCAGAACTTCGAAGAGCACCATGTACCACCACTGGACGAGAAACAGCAGCAGTGCGCCCAGGCCCATGCCGAACTTGCCCAGCAG TCCGAGCGTAAAGAAGAGGATCAACAGCAGGGCGCCGCGAATACCCAGGTCGATGGCGAAGGCGAGCGCGCGCGGAACGAGACCGGCCGGGCGCAACGCC AGGTCGATGCCCTCTGGGGTTTCCACGCGATGGCTGGTGTCGAGCAGGGCTTGGCGGTCGATGTTCGATGGCAAGGGCAAGGTCGTCTAGGGTCAGGCAG AAGCTGATGCTATGCGGCAAGCACGGCTGCGGCAATGCGCGATGGTCAGATGACCGGCCGGGCACCGAAAGTGGGACGGATTATGGCGAAATGCCTGCTC CCTTGCAGGATGCCGTTCGCAGAGCGGGGCACTTCCTGACTCACCGCGATGGGCATGTCGCAGCTGTTAGACTGCTGTGCTGATCGAGAAGGACTCTCCC
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| DNA Sequence for Gene |
>B382_05957
|sbcB
GTGACTCCAAGCATCTTCTGGTACGACTTCGAAACCACAGGCATATCGCCCAGCCGCGACCGCCCCTTGCAGGTTGCCGGTATCCGCACCAACGAGGCGC TCGAGGAAATCGGCGAGCCGCTGAACATCTACTGTCGACCCGGCGACGACATCCTTCCCCATCCCGCCGCGTGCCTGGTCACGGGAATCACGCCTGCAGT TCTGCAGCAGAAGGGGATGTGCGAGGCCCAGTTCGTTCATCATTTGCATCGGGAATTGTCGACTCCCGGAACCTGCGGCGCCGGCTACAACAGCCTGCGT TTCGACGACGAAGTGACCCGCTACAGCCTGTACCGCAATTTCTACGATCCGTATGCACGCGAATGGCAGGGCGGCAACAGCCGTTGGGACCTGATCGATC TGGTGCGTACCGCCTATGCACTGCGCCCGGAAGGAATTGGCTGGCCGGAAGACGACGGGCGGGTGACGCTCAAGCTCGAGCGCTTGAGTGCCGCCAATGG GCTGGAACATCTGAATGCCCACGACGCGCTGTCCGATGTGCGCGCCACCATTAGCCTCGCCAGGCTCATTCGTGAGCGGCAGCCGCGTCTGTACGAATAT CTCTTCAATCTGCGTCGCAAACATGCGGTGCTTGAGCAGGTCACCCTGCTGGAGCCGCTGGTGCACGTGTCCGGACGCTTCTCGGCTGCCCGGCATTTCC TTTCCGTGGTGCTGCCGCTGGCCTGGCATCCGCGCAACCGCAATGCGCTGATCGTTTGCGATCTGCAAGCCGAGGTGCGGCCGTTATGGCTGGAAAGCGC GGAAACGCTGCGACAGCGGCTCTACACGCGTCGCGACGAGCTGGCCGAGGGCGAGCTACCTGTCCCGCTGAAGCTCGTGCACATCAACAAGTGCCCGGTC CTGGCGCCGCTCAAGGTCTTGCGCGAGGCGGATATCCAGCGCCTGGAGCTGGACTTGCCTGCGTGTCACGAACGTGCTGACGCGCTACGCGAACAGCGCC ACGTGTGGAGCCCCAAGCTGGACGAGGTGTACCGCGAAGAGGGGTTCATCGGTGTGGACGATCCGGAACAGCAACTCTATGACGGCTTTCTGGGCGAGCG CGATCGGCGGCTGTGCGATCGGATTCGCGAGATGGCGCCGGCAGAGCTCGCTCGGCAACAGTGCCACTTCGATGATGTACGGTTAGAGGAATTGCTGTTC CGTTATCGCGCGCGCAACTTTCCGGAAGCGTTATCGGCTGTAGAGCGGGTGAGGTGGCAACGGTTCTGCCAACAGCGCCTTAGCGGCGAGATAGCCGGCG CGCCCAATACCCTTGCGCAGTTCGAGGCGGATATACAACAGTTCATGCTCACTGCCGCCCCGGCGCAGCAGCAGCTATTGCAGCAGTGGCGTGAATACGG GCGCGCCTTGGGTGAGCGTTACGGGTGCAACTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCGTCCGGCCCGGTTGGCTATCGAAAAAGAGCAGCGGCTGTTACGGGTGGGAAGCGCGCAATAAAAAACGCCGCTTGTCGACGTCGATCAATAACGTCG GGAAGCGGCGTTCTTTATAACCCTGGTATTGCTTAGCCCAGAAGAGTGGCCCAGCTTTCCACGGTGTCGGAGCCCCATTGGGCTTTCCATTCTTTCAGCG TCTTGTGGTTGCCACCTTTGGTTTCAATCACTTCACCGCTGTGCGGGTTCTTGTACTGCTTGACGCGACGTGCGCGCTTGCTGGTGGGCGCTTTCGCCGC ACGTGGAGTTTTGCTGTTGCGGGAGGCATCCGGATCGAGCAGGGCGATGATGTCGCGCAGCGACTTCTGGTATTCGCCCATGAGTTCGCGCAGCTTGCCT TCGAACTCCAGTTCCTTTTTCAGTTTGTCATCTTCGGAAAGGGACTTCAGTCGCTCCTGAAGTTCCTTGATGGCCTCTTCAGTGGCGCGATACTCGTTGA
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| Amino Acid Sequence |
>exonuclease I
MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLR FDDEVTRYSLYRNFYDPYAREWQGGNSRWDLIDLVRTAYALRPEGIGWPEDDGRVTLKLERLSAANGLEHLNAHDALSDVRATISLARLIRERQPRLYEY LFNLRRKHAVLEQVTLLEPLVHVSGRFSAARHFLSVVLPLAWHPRNRNALIVCDLQAEVRPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINKCPV LAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQQLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLF RYRARNFPEALSAVERVRWQRFCQQRLSGEIAGAPNTLAQFEADIQQFMLTAAPAQQQLLQQWREYGRALGERYGCN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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