Pseudomonas stutzeri B1SMN1, B382_01580

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0042834 peptidoglycan binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05036
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02071
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF05036 SPOR domain IPR007730 Sporulation-like domain 197 262 1.4E-11
SUPERFAMILY SSF50685 Barwin-like endoglucanases IPR036908 RlpA-like domain superfamily 41 130 4.19E-11
SUPERFAMILY SSF110997 Sporulation related repeat IPR036680 Sporulation-like domain superfamily 198 269 4.05E-11
Pfam PF03330 Lytic transglycolase IPR009009 RlpA-like protein, double-psi beta-barrel domain 41 130 1.3E-24
FunFam G3DSA:2.40.40.10:FF:000003 Endolytic peptidoglycan transglycosylase RlpA - - 40 133 9.4E-44
PANTHER PTHR34183 - - - 2 265 1.7E-71
Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. IPR034718 Endolytic peptidoglycan transglycosylase RlpA 4 133 24.645252
NCBIfam TIGR00413 JCVI: septal ring lytic transglycosylase RlpA family protein IPR012997 Rare lipoprotein A 43 134 7.3E-42
Gene3D G3DSA:3.30.70.1070 Sporulation related repeat IPR036680 Sporulation-like domain superfamily 194 268 7.7E-11
CDD cd22268 DPBB_RlpA-like - - 42 131 1.84718E-55
Gene3D G3DSA:2.40.40.10 - IPR036908 RlpA-like domain superfamily 41 134 1.3E-37

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.