Pseudomonas stutzeri NF13, B381_20121
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri NF13 contig00102, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCTGATCGCCGCCGAGCTGAATCGCCCGCATGGCTCGCTGCGCAGCGTCGCCGAGGCGTTGGGCCTGCCGCGCAAGACACTGCACGACAAGCTACGCA AGCACGGGCTGAGTTTTACCGACGCTGGCGGAACCTCGCCCGATGAAAACGAGTAGATGGCGGAAATCCGCCATCCTCTTCACTGACTAGGACCGTGCTC GCCGGCAGCGACCACGGCCTGTGCGCGGGCCGTGCCAGCGCCAGAACTCCCGCGCAAAGGTGCGACCTAGACGCGCTTGTTGGCAATTGGCCATTCAAAC CTTCATCTATTGCTGGGTAAACTCACTGCCCTCAGGCGGCTCTGCCAGCTCTTGGCACAGGCATTGCTCCTGAAACTCAATGAACCGGACGGAACGAGTT GCGATGGAGCATCGCACCCAGGCTTCAGCGCCTAGACTTGTCCAGCTGGTTACTGCCGGGATGCCGTGTGGCCTCCCACCCACAACAAGAGGAAACATCA
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| DNA Sequence for Gene |
>B381_20121
ATGTTCAAACTGACTGCCAAGGCGCTGGCATGCGCCCTGTCGCTGAGCATCGCTGGTCTGGCCCACGCGGCTGACCCGATCACCATCAAGTTCTCCCACG TGGTCGCCGAAAACACGCCGAAAGGCCAGGGCGCCCTGATGTTCAAGAAACTGGTGGAAGAGCGTCTGGCCGGCAAGGTCGAGGTGCAGGTTTACCCGAA CTCCTCGCTGTTCGGTGATGGCAAGGAAATGGAAGCCCTGCTGCTGGGTGACGTGCAGCTGATCGCTCCGTCGCTGGCCAAGTTCGAACACTACTCCAAG GGCGTTCAGGTCTACGACCTGCCGTTCCTGTTCGATGACATCGCGGCAGTCGACCGCTTCCAGAAGAGCGAGGCTGGCCAGGGCCTGCTGCGTTCCATGG AAGACAAGAACATCACCGGCCTGGGCTACTGGCACAACGGCATGAAGCAGCTGTCGGCCAACAAGGAACTGCGTGAGCCGAAAGACGCGCGCGGCCTGAA GTTCCGCGTACAGGCGTCTGCAGTGCTGGACGAGCAGTTCAAGGCGCTGCGTGCCAACCCGCGCAAGATGAGCTTCGCCGAGGTGTACCAGGGCCTGCAG ACCGGCGTGGTCAACGGTGCCGAGAACCCCTACTCGAACATCTACTCGCAGAAGATGCACGAAGTGCAGAAGCACATCACCGAGTCCGACCATGGCCTGC TGGACTACATGCTGATCACCAACACCAAGTTCTGGAACGGCCTGCCTGCCGATGTACGTGGCGAGCTGGAAAAGATCGTGGAAGAAGTCACTGTTGAGGT GAACAAGCAGGCCGACGACCTGAACCAGAAGGCCAAGGCTGACATTCTGGCCGCCGGCACCACCGAAATCCTCGTGCTGACGCCGGAAGAGCGTGCCAAG TGGCGCGAAGCCATGAAGCCGGTCTGGAAGAAGTTCGAAGGCGAAATCGGTGCTGACCTGATCAAGGCCGCCGAAGCTGCCAACCAGGCTAACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTCTGCCGAGGGGCGGACACTCCGCCCCTTTGCCGCATCACCCAGCGATACCCGACAGCTCAGTGAAAAAACAAAGCAGCTAGCGAAGACGAAGCCCG CACCAAGGGCAGACAGGTCAGGCCAAGGCGATCCCGGGCCGCGCCGCTTCGATGGCGACAACAAGAGTTTTTCATTGCTCTGTCCCCCAGCCTGCCCCGG CTGGTTCACGGCGCACCTCCGTGCTGCCTTCGATACAACAAGCAGTCCATCGGGAGATGTCATCCATGAACGCCCTCTGGCGCGTCTGGGACCACTTCGA GGAAGGTTTCATCGCCTTTCTGCTGGCCGCCATGACACTGGTGACCTTCGTCTACGTGATCCTCAACAACCTCTACACCCTTTTCTACGACCTGGGCGAC CGGTTCGAGGGAAGCGCCGATTTCTGGTTCGCCATCGGTGACTTCATCATCGGCCTGGCCCAGTCCATGACCTGGAGCACCGCGCTGACCAAGGCGCTGT
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| Amino Acid Sequence |
>C4 dicarboxylate binding protein
MFKLTAKALACALSLSIAGLAHAADPITIKFSHVVAENTPKGQGALMFKKLVEERLAGKVEVQVYPNSSLFGDGKEMEALLLGDVQLIAPSLAKFEHYSK GVQVYDLPFLFDDIAAVDRFQKSEAGQGLLRSMEDKNITGLGYWHNGMKQLSANKELREPKDARGLKFRVQASAVLDEQFKALRANPRKMSFAEVYQGLQ TGVVNGAENPYSNIYSQKMHEVQKHITESDHGLLDYMLITNTKFWNGLPADVRGELEKIVEEVTVEVNKQADDLNQKAKADILAAGTTEILVLTPEERAK WREAMKPVWKKFEGEIGADLIKAAEAANQAN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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