Pseudomonas stutzeri NF13, B381_18779
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri NF13 contig00094, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCATTCTCGTCGGCGAAATGCGCGACCTGGAAACCATCCGCCTGGCGCTGACCGCTGCGGAAACCGGTCACCTGGTGTTCGGCACCCTGCACACCACCTC CGCCGCCAAGACCATCGACCGTGTGGTCGACGTGTTCCCGGCCGAAGAAAAGTCCATGGTCCGCTCGATGCTCTCCGAATCGCTGCAGGCGGTGATCTCG CAGACCCTGCTGAAGAAGGTCGGCGGCGGTCGTGTGGCGGCCCACGAGATCATGATCGGCACGCCGGCGATCCGTAACCTGATTCGCGAGGACAAGGTGG CGCAGATGTATTCCTCGATCCAGACCGGCGGCTCGCTGGGCATGCAGACCCTCGACTCGTGCCTCAAGGGACTGCTCGCCAAAGGGCTGATCTCGCGAGA CAGCGCCAAGGAAAAGGCCAAGCAGCCAGAGAACTTCTAAACGCCTGACAACTACCGGGCGCCGCCCGATGCGGCGCTTGCCACGATTGCGAGTACGACG
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| DNA Sequence for Gene |
>B381_18779
ATGGAATTCGAGAAACTTCTGCGCCTGATGGTGGAAAAGGGCGGCTCCGATCTGTTCATCACCGCAGGCGTGCCGCCTTCGATGAAGGTCAACGGCAAGA TCATGCCGGTCAGCAAGACGGCGATGTCGCCGGAAATGACCCGCGAGACCGTGCACGGTGTGATGAACGAGCAACAGCGCCGCGAGTTCACCGAGAACCA CGAGTGCAACTTCGCCATCAGCGCCCGCGGTATCGGCCGTTTCCGGGTCAGTGCGTTCTACCAGCGCAATCTCGCCGGCATGGTGCTGCGGCGTATCGAA ACCAACATTCCGACCATCGAAGAACTCAAGCTGCCGGATGTCCTCAAGAAGCTGTCGATGACCAAGCGCGGGCTGGTGCTGTTCGTCGGCGCCACCGGTA CCGGCAAGTCGACTTCATTGGCTTCGATGATTGGCTACCGCAACAAGAACTCCAGCGGGCACATCATCTCCATCGAAGACCCGATCGAATTCATCCACCA GCATCAGAACTGCATCGTCACCCAGCGCGAGGTCGGTATCGATACCAGCTCGTTCGAGGTGGCCCTGAAGAACACCCTGCGCCAGGCCCCGGACGTGATC CTCATCGGCGAGATCCGTACCCGTGAAACCATGGACTACGCCGTGGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCGACATTGCACGCCAACAACGCCA ACCAGGCGCTGGACCGCATCATCAACTTCTTCCCGCCTGATCGTCACAACCAGGTGTGGATGGATCTGTCGCTCAACCTCAAGGCCATCGTCGCCCAGCA ACTGGTGCCGACGCCCGACGGCAAGGGGCGGCGGGCGGTGATCGAGGTGCTGATCAATACGCCGCTGGCGGCCGACCTGATCCGCAAGGGCGAGGTGCAT GAGCTCAAGTCGCTGATGAAGCGCTCCACCGAACTGGGCATGCAGACTTTCGATCAGGCGCTGTACAACCTCTACGTGCAGGGCGAAATCACCTACGAAG ATGCGTTGTTGCACGCCGACTCGGCCAACGACCTGCGTCTGCTGATCAAGCTGGGATCGGAAACCGATGGCGAGCATCTGACCAGCGTGTCGCAGGGTCT GAGCCTTGAGGTCAGTGAAGACGATCCAGGCCGCAGCTTCCGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGGCTGTTTTGCATCCCGGCCGATGCGCTTTCCGCTTCTCGCGGCGACGCGCTCGGCCTGGCCGTCACGCTGCGCGCCGGCACGCGCGCGGCTCATGA GTTGCGGGATCAACATGCCTTCAGGAAGGTTCTTCCAGAAACGCACAGGCAGGTTGCTCTCCAGTACGCCGCGGTTCAGTCGGGCCGGGTTGAACGTGCT CTCGTAATACGCCTTCCATAGCTCGCCGCCGGGGTCCGCTGCGTTCTGCGCCAGCTGTCGCCACTGTGGTGGACAGGGGCGGGTGTAGTACATCTCCCGG CCATCCCAGCAAACCCCTTCTTCCGGCGTCGCAATCAGCCAGCTGTTGCCACCCATCCGTTCAGTGAAATGCCCTGCCGCCCAGGGCAGTACGTCATGCG CAGGTTCGAACCAGGCGACGTGTTGCGGCCCGTCATTGGCCTGCAGTGGGCTGAAGCGAAGAAAGGCATGCAGGTGGTGGGCCTCGCGACGGACTGCCTT
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| Amino Acid Sequence |
>twitching motility protein PilU
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVSKTAMSPEMTRETVHGVMNEQQRREFTENHECNFAISARGIGRFRVSAFYQRNLAGMVLRRIE TNIPTIEELKLPDVLKKLSMTKRGLVLFVGATGTGKSTSLASMIGYRNKNSSGHIISIEDPIEFIHQHQNCIVTQREVGIDTSSFEVALKNTLRQAPDVI LIGEIRTRETMDYAVAFAETGHLCLATLHANNANQALDRIINFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVH ELKSLMKRSTELGMQTFDQALYNLYVQGEITYEDALLHADSANDLRLLIKLGSETDGEHLTSVSQGLSLEVSEDDPGRSFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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