Strain | Pseudomonas stutzeri NF13 contig00038, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCAGTGTCCGCCGGCAGCGCCAGCCGGAGTCTGCTTGCCATCGATCTCGGCCGGCTCGCAACTGCCCTTGGCGTGAACGTGAAAGCCGTGGGTGCCAGGC TGCAGGCCAGATAGCTCGGGACGGAACACCAGCCCGTATTCGTTGCTTTCGATCTTGACGCTGCCGACCGATTCGCCGACGCCCTGGGCCGTCACGGCAT TCACCTTGACGCTCAATGTCTCAGCCTGAACGGCGACGGCAGTGCAGCCGGCCAGCGCGGCGATGATCCACTGTTTCATCTGAAAGCTCCTTTGTACAAA CGGCGACGGGCTGTCGCCGGTTGCTAGTGTGACTGCCAGTTGTCGATGGCGTTCGCTGGCGCGGCGGCTCGCAGGTCGGGTCGGGGAGAGGCCGTGCGGC GGGCTCTGCGACGGGGCGCGGAAGTTGGACCCCTTCTTGCTATAACCCGGGCAGGACGCTTGTCGCGTCAAGAATTCGTTATGTATCCCCGGGGGCTACG
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DNA Sequence for Gene |
>B381_06966
|flhA
TTGGATCGCACGCAACTCATCAATATTCGCAATGGCCTGACGGGTGCGGGGCGCGGCAACCTCGGCGTGCCGCTGCTGCTGCTGCTCGTGATGATGGGCA TGATGATGCTGTCGGTGCCGCCGTTCCTCCTGGATCTGCTGTTCACCTTCAACATCGCGTTGTCGATCGTCGTGCTGCTGGTCAGCGTCTATGCGCTGCG CCCGCTGGATTTCGCGGTGTTCCCAACGATTCTGCTGGTCGCCACGCTGATGCGTCTGGCGTTGAACGTGGCGTCGACGCGGGTGGTCCTGATCAACGGC CATGAGGGCGGCTCGGCTGCAGGTCATGTGATCGAGGCCTTCGGTAATGTGGTGATCGGCGGCAACTACGTCGTCGGTATCGTGGTGTTCGCGATCCTCA TGATCATCAACTTCGTCGTGGTGACCAAGGGTGCCGGCCGTATCTCGGAAGTCAGCGCGCGTTTCACCCTCGATGCCATGCCCGGCAAGCAGATGGCGAT CGACGCCGACCTCAATGCCGGCCTTATCGACCAGGAAGAAGCCAAGAAGCGCCGTACCGAAGTGTCGTCCGAAGCCGATTTCTACGGTTCCATGGACGGT GCGTCGAAGTTCGTCCGCGGTGACGCCATCGCTGGCCTGCTGATTCTCTTCATCAACCTGATTGGCGGCGTCGGCATCGGCATGGCGCAGCACGGCATGA GCTTCAGCGAAGCTGGCCAGGTCTATGCGCTGCTGACCATCGGTGATGGCCTGGTTGCGCAGATTCCTTCGCTGCTGCTGTCCACCGCAGCGGCCATCAT GGTGACCCGCGTTACCAGTTCCGAGGACATGGGACAGCAGGTGCAGCGGCAGATGTTCGCCTCGCCGAAGGCGCTGGCCGTGTCTGCGGCGATCATGATT GCCATGGGCCTGGTCCCAGGCATGCCGCATATGTCCTTCCTCGGCCTCGGCGCCGCGGCTGCAGGCGGTGCCTACTGGATCTGGCATCGGCAGAAACAGG TCGTGAAGAAAGCCGAGCAGGAAGTACAGAAACAGCAGGATCTGCTCCCGGCCCAGCGTGCGGCTGAAACCAAGGAGCTGGGCTGGGACGATGTGACCCC GGTGGACATGGTGGGGCTGGAAGTTGGCTACCGCCTGATTCCGCTGGTGGATCGCAACCAGGGCGGTCAACTGCTGGCGCGAATCAAGGGCGTGCGCAAG AAGCTCTCGCAGGACCTGGGCTTCCTGATGCCCTCGGTTCACATCCGCGACAACCTCGATCTGTTGCCCAACGCCTATCGCTTGACGCTGATGGGGGTCA GTCTGGCCGAGGCGGAGGTCTATCCGGATCGCGAGCTGGCGATCAACCCGGGTCAGGTGTTCGGCCCCTTGAACGGCATTACCGCCAGAGACCCGGCGTT CGGGCTGGAGGCGGTCTGGATCGAGGCGAGCCAGCGCGATCAGGCGCAGTCGCTCGGTTACACCGTGGTGGACGCCAGTACCGTGGTCGCCACCCACCTC AATCAGGTGCTGCACAAGCATGCCCACGAGCTGCTTGGCCATGAGGAAGTCCAGCAACTGCTGCAGTTGCTGGCCAAGAGCTCGCCCAAGCTGGCCGAGG AACTGGTGCCCGGCATGGTTTCGCTGTCGACGCTGCTCAAGGTGTTGCAAGCCTTGCTGCAGGAGCAGGTGCCGGTGCGCGACATCCGTACCATCGCCGA GGCCATCGCCAATGCGGCGGCCAAGAGTCAAGATCCCGCCGCAATGGTTGCCGCGGTACGTGTCGCACTGTCTCGCGCAATCGTGCAAAACGTTGTGGGA CTAGAGCCGGAGCTGCCTGTGATCACGCTGGAGCCTCGGTTGGAACAGATTTTGCTCAATAGCCTGCAGAAGGCTGGTCAAGGCTCCGAAGACGGCATTC TGCTGGAGCCGGGAATGGCCGAAAAGTTGCAAAGGTCTCTGGTAGAAGCAGCACAGCGTCAAGAAATGCTCGGCAAACCGGCAGTACTGCTGGTGGCCAG CCCGGTACGGGCGATGCTGTCGAGATTCGCGCGTCTGGCGGTACCGAACATTCATGTTCTGGCCTACCAGGAAATACCGGACAACAAGCAGGTCACCATC GTCTCGACGGTGGGTCAGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCGAGGGTACAGGCCATGCAGGTCAAACGTTTCTTCGCCGCCGATATGCGCATCGCCATGAAAATGGTTCGCGACGAGTTGGGCGCCGATGCCGTGATCA TCGGCAATCGCCGGGTGGCCGGTGGCGTCGAGCTGACTGCTGTGCTCGATTACCCCATGCAGTCCGCACCGGCAGCCAACAAGCCCAATCCTGCGCTGGA AGCCGAATTGCGCAAGACCCAGTCGCGTCTGGCCAATGCACATGCCGAGCTGAGCGCCGCCCCACGGGCGAAGATGCAGGATCGTCAACTGGTTGACGAG AAGCCCGCCGCAGCGACCAGCAAGGTGCAACCCGAGGCGGTTGCCGAGCCTTCCCCCGCGGCCGACTCCCGTGCCATCGAAGCGATGTACTCGGAACTGC ACGGTTTGCGCGAGCTGATCGAAGTGCAGCTCGGCTCGATCGCCTGGGGGCAGGAGCAGAGCCGTCGTCCGCAGCAGGCCGGCCTCTGGCGCCGTCTGCA
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Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MDRTQLINIRNGLTGAGRGNLGVPLLLLLVMMGMMMLSVPPFLLDLLFTFNIALSIVVLLVSVYALRPLDFAVFPTILLVATLMRLALNVASTRVVLING HEGGSAAGHVIEAFGNVVIGGNYVVGIVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQEEAKKRRTEVSSEADFYGSMDG ASKFVRGDAIAGLLILFINLIGGVGIGMAQHGMSFSEAGQVYALLTIGDGLVAQIPSLLLSTAAAIMVTRVTSSEDMGQQVQRQMFASPKALAVSAAIMI AMGLVPGMPHMSFLGLGAAAAGGAYWIWHRQKQVVKKAEQEVQKQQDLLPAQRAAETKELGWDDVTPVDMVGLEVGYRLIPLVDRNQGGQLLARIKGVRK KLSQDLGFLMPSVHIRDNLDLLPNAYRLTLMGVSLAEAEVYPDRELAINPGQVFGPLNGITARDPAFGLEAVWIEASQRDQAQSLGYTVVDASTVVATHL NQVLHKHAHELLGHEEVQQLLQLLAKSSPKLAEELVPGMVSLSTLLKVLQALLQEQVPVRDIRTIAEAIANAAAKSQDPAAMVAAVRVALSRAIVQNVVG LEPELPVITLEPRLEQILLNSLQKAGQGSEDGILLEPGMAEKLQRSLVEAAQRQEMLGKPAVLLVASPVRAMLSRFARLAVPNIHVLAYQEIPDNKQVTI VSTVGQN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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