Pseudomonas stutzeri NF13, B381_03427

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 211 777 0.0
CDD cd00130 PAS IPR000014 PAS domain 262 355 3.59485E-11
Coils Coil Coil - - 524 544 -
Pfam PF00672 HAMP domain IPR003660 HAMP domain 193 242 2.9E-6
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 240 356 2.99E-18
SMART SM00052 duf2_2 IPR001633 EAL domain 534 778 2.0E-103
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 525 780 5.6E-92
SMART SM00267 duf1_3 IPR000160 GGDEF domain 358 524 1.2E-62
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 358 524 2.5E-52
CDD cd01949 GGDEF IPR000160 GGDEF domain 370 522 2.93668E-48
Pfam PF00563 EAL domain IPR001633 EAL domain 540 773 4.4E-70
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 366 523 9.3E-32
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 369 520 6.7E-42
Gene3D G3DSA:3.30.450.20 PAS domain - - 250 357 8.3E-18
CDD cd01948 EAL IPR001633 EAL domain 540 778 2.34828E-101
SMART SM00304 HAMP_11 IPR003660 HAMP domain 194 246 3.1E-5
Gene3D G3DSA:6.10.340.10 - - - 161 249 4.9E-9
Pfam PF00989 PAS fold IPR013767 PAS fold 254 355 9.5E-12
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 539 780 1.15E-81
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 374 526 8.63E-46
SUPERFAMILY SSF158472 HAMP domain-like - - 194 243 2.62E-5
SMART SM00091 pas_2 IPR000014 PAS domain 253 320 9.1E-11
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 250 365 1.6E-14
CDD cd06225 HAMP - - 197 241 9.54388E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.