Pseudomonas sp. M47T1, PMM47T1_28286
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig045, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGATGACCCGAATGACCCCCACCAAGATTTTCATCAGCGCTCTGGCGTTCATCGTGTTGTCAGGTTGTTCGGCACTGTCGCCTTACTCGACCCAGACCA AGCTGGATCTCAAACTCAGCGCGGGTGATGAGCTTAATCCCGATCTCAATGGGCGCCCTTCGCCGATTGTTCTACGGTTGATCGAGCTCAAGCACCCAGT GGCGTTCCAGAACGCCGACTTCTTCAGCCTGTACGAGCGCGCCAAGGACATTCTGGCCCAGGACTTGGTAGCCAGCGAAGAAATCGAACTGCGCCCGGGC GAAACCCAAGACCTGAAGCTGACAGTGGACAGCGGTAGCCGCTATGTCGGCGTGCTGGCGGCGTATCGTGACCTGCCGGAAAGCCAGTGGCGCTACATCA TTGCGGTTGACGCGCAGAAGCTGACCAAAATAAACCTGAACCTGGACAAGGACGGCATCCACAATCCGGATGACAAGCCTGCCAAGGCGGATGATCGTTC
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| DNA Sequence for Gene |
>PMM47T1_28286
ATGAATTCTCATAAAGTCATCTGGCAGGAAGGCATGCTGCTGCGGCCTCAGCACTTCCAGCACAACGACCGTTACTACGATTATCAGATGAAGTCCCGTA CCCAGATGCTGGGGCGCTACACGTGGGGTTTCCTTGATCTGGAAATCGACCTGCAGTTTCTCAACATGGGCAAGCTGGTGGTCAGCCAGGCATCGGGTGT GCTGCCCGACGGCAGCCTGTTCAACCTGGATGGCAACAGCGAACCGCTGGCGCTGGACGTGCCGCCTAACACCGGCAATACGCCGGTGTACTTGGCGTTA CCTCTGGTTACCGGGAACCACGTGGAATCGCGCCGCAGCACTGACCGCGATGTCCTGGCGCGCTACACCGTCTATGAAATGGATGTGTCGGATTCCAACG CGGGCGATGACTCCAGCAGCCAGGTGAGCTGCGCTCGTCCGGATTTCCGCCTGCTGCTGGGTGAACAGCAGAACGATCAGGCTTATGTGAAGCTGAAGAT CTGCGACGTCATGGACACCTCTCCCGACGGCGTGATCAGCCTCGACCCTGACTTCATCCCCACCTACATCCATGCCCACGCCTCGCCCTACCTGCTGTCC TGCCTCAAGGAAGTGATCAGCATGCTGGATAACCGTGGCGAGGTGCTGGCGGACCGCATTCGTTCCAACGGCAAGGTGGGTGGGGCAGAGGTCGGCGACT TCCTGATGTTGCAGTTGATCAACCGCACCGGGCTGCTGCTGCGCCATTACATGGGCATTGAGCAGGTCCACCCCGAAGAGCTGTACCGTACGCTGCTGAC CATGTTGGGCGACCTGTCGACGTTCGCCAGCGACACCAAACGGCCGCGTACCGACAGCCATTACCAGCATAGCGACCAGGGTGCGAGCTTCCGCAAACTG ATGGAATCCATCCGCCAAGTGCTGTCGATGGTGCTGGAACAGCATGCGATCGAAATGATCCTCCAGCAGCGTCAGTACGGTATTCGCGTGGCACCTTTGC AGGACCACAAATTGCTGAGCACCGCCTCGTTTGTGCTGGCGGCCAGTGCCAACTGCGATTCGGAAGAGTTGCGCCATCGCCTGCCGTTGCACCTCAAGGT TGCGCCGGTGGAGCAGATCCGCCAACAGGTCAACCTGCACTTGCCTGGTATCAAGGTTCGGCCGTTGCCAGTGGCACCACGACAGATTCCTTTCCACTCG GACAAGACCTACTTCGTCCTCGAATTCAGTTCCGAAGATCTGGCCCAATTGGAGCGTTCCGGCGGCTTCGCCTTCCACGTCTCGGGCGAATTCTCCGACC TTGAGCTGAAGTTCTGGGCCATCAGGAACTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAATGAACACGGAAATGGATTATCAACAGGACGAATCTACTGTTCTGGCGAACCGCGAGGGCCAACGTCCCAGCCACGAACCGCTAACGGACTTTGCCAA GCCACCGCGTTACGAAGAGCTGGAAGAGCGGATGATCTACGCCGCCACCCGCCGTCCGGACGAAACGTTCAATATCAGTATCAACCCCCTGGTCTCGGCG GCTGCGCCTTTGTTCTCCGCTATCGTGGAGCTGAAAAATGGCGCGGGCAGGCGTGAACTGTCAGAGCTGAAGTCAGAATTGACCCGGCACCTGAAGCGTT TTGAAGCCCAGGCACTGAACGACGGTGTGGAAAACAGTCAGGTTTCTGCCGCCCGCTATGTGCTGTGCACTGTGGCTGACGAAGCTGTAGTGACGACCGA CTGGGGCAGTGAAGGCGACTGGTCGAACTTCAGTTTGCTGAGCAGCTTTCACAACGAAACCTTTGGTGGCGAGAAGTTCTTCCAGTTGCTTGAGCGCCTG
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| Amino Acid Sequence |
>type VI secretion protein
MNSHKVIWQEGMLLRPQHFQHNDRYYDYQMKSRTQMLGRYTWGFLDLEIDLQFLNMGKLVVSQASGVLPDGSLFNLDGNSEPLALDVPPNTGNTPVYLAL PLVTGNHVESRRSTDRDVLARYTVYEMDVSDSNAGDDSSSQVSCARPDFRLLLGEQQNDQAYVKLKICDVMDTSPDGVISLDPDFIPTYIHAHASPYLLS CLKEVISMLDNRGEVLADRIRSNGKVGGAEVGDFLMLQLINRTGLLLRHYMGIEQVHPEELYRTLLTMLGDLSTFASDTKRPRTDSHYQHSDQGASFRKL MESIRQVLSMVLEQHAIEMILQQRQYGIRVAPLQDHKLLSTASFVLAASANCDSEELRHRLPLHLKVAPVEQIRQQVNLHLPGIKVRPLPVAPRQIPFHS DKTYFVLEFSSEDLAQLERSGGFAFHVSGEFSDLELKFWAIRNS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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