Pseudomonas sp. M47T1, PMM47T1_26478 (fliR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig036, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGAGCTGAAGACGGCGTTCCAGATCGGCTTCATGATCTTCATCCCGTTCCTGATCATCGACCTGGTGGTTGCCAGTGTGCTGATGGCCATGGGCATGA TGATGCTGTCGCCGCTGATCATCTCGCTGCCGTTCAAGATCATGCTGTTTGTGCTGGTGGATGGCTGGGCCCTGATCATTGGTACCCTGGCCAGCAGTTT TGGCGGCGTCTGAGACCCCGCACGGAGATTCGTCATGACCCCTGAAGTGGCTGTCGACCTGTTTCGCAATGCCCTGTGGCTGACCACCATGATGGTCGGC ATCCTGGTGGTGCCAAGCCTGGTGGTGGGGTTGATCGTGGCCATGTTCCAGGCGGCCACGCAAATCAACGAACAGACCCTGAGCTTTCTGCCGCGCCTGC TGGTGATGCTGATTACCCTGATCATCGTTGGCCCCTGGCTGGTGCGCACGTTCATGGAGTACATCACCAACCTGTACACCAGCATCCCGCAGTTGATTGG
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| DNA Sequence for Gene |
>PMM47T1_26478
|fliR
ATGAACCCGCTCCTGCACCTGACCGACGCGCAGATCGGCGCCTGGGTCGCCAGCTTCGTGCTGCCGCTGTTTCGCGTGGGTTCCATGCTGATGGCCATGC CGGTATTTGGTACCACCATGGTGCCCAAGCGCGTGCGCCTGTACCTGGCGCTGGCCATTACCGTGGTGATCGCGCCATCGCTGCCGCCCATGCCGGTGGT CGATTCCTTGACGCTGCCCAGCCTGATGCTGGTGGGCGAGCAGATCATCATCGGCTCGTTGCTGGGCTTCTCCCTGCAGATGCTGTTCCAGGCGTTTTTG ATTGCCGGGCAAATCCTGGCCATCCAGATGGGCATGGGCTTCGCGTCCATGAACGACCCGGTCAACGGCGTGCAGACGGCGGTGGTGGGGCAGTTCTTCA CCATGCTGGTGACCCTGCTGTTCCTGGCCATGAACGGCCACCTGGTGGCATTCGAGGTGTTGGTGGAAAGCTTCACCACCTTGCCGGTGGGCGGCGGTGT GCTGGTGAGTCAGTTCTGGGAGCTGATCATGCACATGAGTTGGGTGCTGGCGGCGGCAGTGATTCTGGTATTGCCGGCCATCACCGCGCTGCTGGTGGTC AACGTGGCGTTCGGGGTGATGACTCGCGCCGCGCCGCAACTGAACATTTTTTCCATTGGTTTTCCGTTGACGCTGGTGATGGGCATGGTGATTCTGTGGC TCAGCCTGGCGGACATTCTCAATCAATACCAGCCGATGGCCTCCGAGGCCTTGCAGTGGCTGCGCGAACTGGCACGGGCACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATGGCCGAAAGCGAGAGTGGTCAGGACAAGACAGAAGACCCCACGGACAAAAAGCTCCGTGAGGCCCGCGAACGCGGTGAGGTGGCGCGATCCAAGGAG CTGAACACCCTGGCGGTGATGATTGGCGGCTGCGGCGCGCTGCTGGCCTACGGCGGCCACCTGGCGCAGACGATGATGGAGTTGATGCGCATCAACTTCA CCATCAGCCGCGAAACCCTCATGGACCAGAGCCAGATGGGCGTACTGTTGCTGGCCTCGGGCAAGATGGCCATCGACGCCGTGCAGCCGATTCTGCTGGT GCTGCTGATCGTCTCGTTCGTGGCGCCCATCTCCCTGGGCGGCTGGCTGTTCTCGCCGGGCTCCATGGCGCCGAAATTCAGTCGCATGAACCCCATCAGC GGCATCAAGCGCATGTTCTCCATGCACGCTCTCACCGAGCTGCTCAAGGCCCTGGCCAAGTTCTTCGTGGTGCTGCTGGTGGCGTTGTTCGTGCTGAACA
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| Amino Acid Sequence |
>flagellar biosynthesis protein FliR
MNPLLHLTDAQIGAWVASFVLPLFRVGSMLMAMPVFGTTMVPKRVRLYLALAITVVIAPSLPPMPVVDSLTLPSLMLVGEQIIIGSLLGFSLQMLFQAFL IAGQILAIQMGMGFASMNDPVNGVQTAVVGQFFTMLVTLLFLAMNGHLVAFEVLVESFTTLPVGGGVLVSQFWELIMHMSWVLAAAVILVLPAITALLVV NVAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWLSLADILNQYQPMASEALQWLRELARAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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