Pseudomonas sp. M47T1, PMM47T1_26253

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0042834 peptidoglycan binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.70.1070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02071
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00413 JCVI: septal ring lytic transglycosylase RlpA family protein IPR012997 Rare lipoprotein A 102 196 2.0E-43
PANTHER PTHR34183 - - - 13 326 8.6E-76
Pfam PF03330 Lytic transglycolase IPR009009 RlpA-like protein, double-psi beta-barrel domain 100 189 3.6E-25
SUPERFAMILY SSF110997 Sporulation related repeat IPR036680 Sporulation-like domain superfamily 261 333 3.66E-10
CDD cd22268 DPBB_RlpA-like - - 101 190 2.14255E-53
Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. IPR034718 Endolytic peptidoglycan transglycosylase RlpA 3 192 24.700027
Gene3D G3DSA:2.40.40.10 - IPR036908 RlpA-like domain superfamily 100 193 6.8E-37
Gene3D G3DSA:3.30.70.1070 Sporulation related repeat IPR036680 Sporulation-like domain superfamily 258 333 3.3E-10
SUPERFAMILY SSF50685 Barwin-like endoglucanases IPR036908 RlpA-like domain superfamily 95 188 1.15E-10
Pfam PF05036 SPOR domain IPR007730 Sporulation-like domain 263 334 1.3E-11
FunFam G3DSA:2.40.40.10:FF:000003 Endolytic peptidoglycan transglycosylase RlpA - - 99 192 1.8E-45

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.