Pseudomonas sp. M47T1, PMM47T1_24855 (rplF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig031, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATGACCGGCTCGCCTGAGCCTGCGTTTTTCGCAGTCTGCTCGGCGACGTAGTAGCCGCAAGGCTAAATATTTTTGTAACAGGAGCGTCTAGCCCATGAG TATGCAGGACCCGTTAGCGGACATGCTAACTCGAATCCGTAATGCCCAGATGGCTGAAAAGTCCGTCGTAAGCATGCCATCTTCCTCGCTGAAGATCGCT GTAGCCAAAGTTCTCAAGGACGAAGGTTATGTCGCGGGTTATCAGGTAAGCAACGAAGCAAAACCGTCGCTTTCCATCGAGCTGAAGTACTTCGAAGGCC GTCCAGTCATCGAAGAAGTCAAACGCGTCAGCCGTCCAGGTCTGCGTCAGTACAAGTCCGTCGATGAGCTGCCAAAAGTTCGTGGCGGTCTCGGCGTATC CATCGTCTCCACCTCCAAAGGTGTGATGACGGATCGTGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTTTGCACAGTGTTCTAAGGGGGGATAAGC
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| DNA Sequence for Gene |
>PMM47T1_24855
|rplF
ATGTCTCGCGTCGCTAAGAACCCCGTAAAGCTGCCGGCTGGTGTCGAAGTAAAATTCGTCGGCCAACAGCTTTCGGTGAAGGGTGCCAAGGGCACTCTGG AACTGAATGTTCACTCGTCCGTTGAAGTCGTTGAAGAAGCCGGTGAGCTGCGTTTTGCTGCTCGCAATGGCGATCAACAGACTCGCGCAATGGCCGGTAC CACTCGTGCCCTTGTCAACAACATGGTCCAAGGCGTAAGCCAAGGCTTCGAGCGTAAGCTCCAGCTGGTCGGTGTTGGTTACAAGGCACAAGCCAAAGGC ACAGTGCTGAACCTGGCTCTCGGCTTCTCGCACCCAGTGGACTACGATCTGCCGGAAGGCATCACCGCTGAGACTCCTAGCCAGACCGATATCCTGATCA AGGGCATCGACAAGCAGCTGGTGGGTCAAGTGGCCGCTGAAATCCGCGATTTCCGTCCACCAGAGCCTTACAAAGGTAAGGGTGTGCGTTACGCGGACGA AGTCGTCCGTCGTAAAGAAGCCAAGAAGAAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCATAGCAAATGACCGACAAAAAAGTTACTCGACTGCGTCGCGCTCGCAAAGCACGCCTGAAAATGCACGAACTCGAAGTCGTGCGTCTCTGCGTGTTC CGCTCTTCGCAGCACATCTATGCCCAGGTCATCTCGGCCGACGGCAGCAAGGTCCTGGCAAGCGCCTCGACTTTGGACAAAGAACTGCGTGATGGCGCCA CTGGCAACATCGACGCGGCCACTAAGGTTGGCCAGCTGGTCGCTTCGCGTGCGAAAGCCGCAGGCGTCTCGCAGGTGGCTTTCGACCGCTCTGGCTTCAA GTACCACGGCCGCGTGAAAGCGCTGGCTGATGCTGCTCGTGAAGCTGGGCTGGAGTTCTAAGTTATGTCAAATAACGACCAAAAGCGCGACGAAGGCTAC ATTGAGAAGCTGGTTCAAGTTAACCGCGTAGCCAAAACCGTTAAAGGCGGCCGTATCTTCACCTTCACCGCGTTGACCGTGGTTGGTGATGGTAAGGGCC
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| Amino Acid Sequence |
>50S ribosomal protein L6
MSRVAKNPVKLPAGVEVKFVGQQLSVKGAKGTLELNVHSSVEVVEEAGELRFAARNGDQQTRAMAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKG TVLNLALGFSHPVDYDLPEGITAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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