Pseudomonas sp. M47T1, PMM47T1_20893
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig022, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGTAGGGCTTGTCCACCTGTACCCACGGCAGTTCACGGCGCTCCTGGGCCAGTCGGTCGCGCTGGCGGCTCAGGGCCTTTTCGTTTTCCAGGTGGGCGA GCCGGGCCGCCAGCCATTGTTGTGTGGAGACCACGGAGTGAGGGGCCGTTTTCATGAAGCGTACTCCTGTTGGTTACGGAAGGGAGAAACGCGGTGCATG CAGCAAAGCCCAGTTATAACAGGCCCTGCACGGGGCGGCGGGCGGGGCGACGAGCGCGGCCGAGCTGTCATCATCCTGTAACCGTTTTGCCATATATATC GAGCAGCCAGGGATGGCAAATTGCCCGCCGACGAACAGCATTCAAGATGCGCTCGGGGGCGCCGATGCGTGGCATGAAGCATCGTTTTTTACTGCATGAA GAAAGGGACGCCTTCGACATCGCCCACGCCTGTGGCGCGGTGATTTATCCCTGTCATGAGTACCCCCACGATGGTCGTGCGAAAATCCTTGAAAGCTCAA
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| DNA Sequence for Gene |
>PMM47T1_20893
ATGCTGACCCTGATCGGCGGCAGCCTGTTGGCCATGCTGCTGATTGCGCTGGCCTGCTTTCACCTGTTGGCCAATGGTGTGAAGGACTATCACCAGTTGA TCGAAGGCCCCTTGCGTACCTCGCAGCTGATTGACGAGGCCAACCTGCAGTTCAAGATTCAGGTGCAGGAATGGAAAGACGTGCTGCTGCGCGGCAAGCA GCCGGCGGACCTGGCCAAGTATTGGGGCCAGTTCGAGGATCGTCAGCGCGACGTGCAGGATATTCTGGGGCGGCTGGTGGCCCAGCCGGGCATCGATGCC AACGTGAAGGCCGACATCCAGGGGTTGCGTGACAAGCACAAGGTGCTGGAGCAGGACTACCTGCGCGGTCGCGATGCGTTTGTGGCCGCCGGTGGCGACC CCTCGGCCGGTGATGCTGCCGTGAAGGGCGTGGACCGCGCGGTCAGCGAACAGATGAGTGCCCTGGTGAGCCAGATCCGCAAGGACGGTGACCAACAGGC CCTGGCCATTCGTGACTCGGCCGACACCACCGTGTGGGTGGGCCTGCTGGTGCTGGTGGTGTCGGGCATTGTCATCGGCCTGCTCAGCCTGGTGGTGGTG AGCCGCTACCTGGTGGTGCCGATTCAGCAACTGATCGACTACGTGGCCGACCTCAGTCGTGGGCAGTTCAACCAGCGCGTGGCCAGCCGCCGCCAGGACG AGCTGGGCCGCCTGGCCGTGGCCGCCAATACCCTGCGCGACTTCCTGGCCGAGACCTTCACGGGCCTCAAGCGCAACGCCGGTGACCTGGATGGCGCCAG CGCCGACTTGCACGGCATTGCCGGGCAAATGTCCCAGGGCACCCACGACCAGTTCAACCGCACCGACCAGGTGGCCACGGCCATGACCGAAATGTCTGCT ACCGCTCAGGAAGTGGCGCGCCACGCCGTGGACGCTGCCCGCGCCGCCGACCAGGCGGATGCCTCCGCGCATCAGGGCGAGCAGGTGATGCGTGCAACCA TCGAGACGATCACCCACATGCGCGGCGAGATCACCACCACGGCTGCGGTGATCGGCAACCTGGAAAACGACAGCGCGCGCATTGGCAAGGTGCTGGAAGT GATACGCGGTATTGCCGAGCAGACCAACCTGCTGGCCCTGAACGCGGCCATCGAGGCAGCCCGGGCGGGCGAGGCGGGGCGTGGGTTTGCCGTGGTGGCC GACGAGGTACGCAGCCTGGCCCAGCGCACGGCGGCGTCGATCATCGAGATCAACCAGATCATCAACGCCGTGCAGGCCGGTGCCAGCGACGCGGTGAAGG CGATCCAGGCCGGCCAGTCACGTAGCGAAGAGGGTGTGGCCCAGGTCACCCAGGCCGGTGACATGCTGCGCCGCATCACCTCGTCGGTGGAAGCGATTCG CGACATGAACCGGCAGATCGCCACGGCGGCCGAGGAGCAGACCTCGGTGGCCGAGGATATTTCGCGCAACCTCTCCGACATCACCCAGATCGCCAGCACC AACCAGGACAACGTGCAACGCACCGAAGTGGCCAGCCGCCGCCTGCACGACCTGTCGCGTCAGCTCAACGAGGTGACCGCGCGGCTCGGCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGCGTGCGCTTTGCAGTTCGTTGATGGCCTGCCACAGGCGCTCATCATTGAAGTCCTCGATCACCAGGTGGGCGCCGGCTGCCAGCAGGGTTTCGCGG CTTTGGCTGGTGGTCAGGCCTACGCTGAAGATGCCGGCCTTGACTGCGGCGGTCAGGCCCGGCACCGAGTCTTCGAAGGCGATGGCCTCGCAGGCCCGTG CGCCCAGGCGCTCAAGGCCGGTGAGGTAGGGCAGCGGGTCGGGCTTGGCCCGTGGCAGCTCCTCGGCCACCACCACGCTGTGAAACCGTTCGATAATCGC CAAGGCGCCCAGCATGTGGTCGGCGTTGGCGCGCGGGGCGTTGGTGACCACCACCTTGCCGATGCCCTGGGCCTCGGCGAATTCCAGCAGGCGCAGCAGG CCCGGCAGCGGCGCCAGTTGCGGCGACAGCTGGCGGAAGCGCTCTTCCTTGCGGTCGGCGAACACCAGGTGCTCAGCCACGCTGCGATCGGGGAACAGGT
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| Amino Acid Sequence |
>methyl-accepting chemotaxis protein
MLTLIGGSLLAMLLIALACFHLLANGVKDYHQLIEGPLRTSQLIDEANLQFKIQVQEWKDVLLRGKQPADLAKYWGQFEDRQRDVQDILGRLVAQPGIDA NVKADIQGLRDKHKVLEQDYLRGRDAFVAAGGDPSAGDAAVKGVDRAVSEQMSALVSQIRKDGDQQALAIRDSADTTVWVGLLVLVVSGIVIGLLSLVVV SRYLVVPIQQLIDYVADLSRGQFNQRVASRRQDELGRLAVAANTLRDFLAETFTGLKRNAGDLDGASADLHGIAGQMSQGTHDQFNRTDQVATAMTEMSA TAQEVARHAVDAARAADQADASAHQGEQVMRATIETITHMRGEITTTAAVIGNLENDSARIGKVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVA DEVRSLAQRTAASIIEINQIINAVQAGASDAVKAIQAGQSRSEEGVAQVTQAGDMLRRITSSVEAIRDMNRQIATAAEEQTSVAEDISRNLSDITQIAST NQDNVQRTEVASRRLHDLSRQLNEVTARLGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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