Pseudomonas sp. M47T1, PMM47T1_17680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig016, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCAGGCTGTGCAGCAGCAGGGTCTGGCCGGGCTTGCCGGACAGGTCGCCGCGCTTGAGCACGGCGGTGAGGGCGCCGCTGCTCAGTTCATCGACCTTC TGGCCGACGGCACCCAGTTTGCGGCCTTCGCCCACGGCGACGACCAGGGTTGCGGTCTTCAGGCTTTCAGCGCTGACGCTTTTTACAACCAATTCCATTT CCGGGTCCCCTAATGAACTGTCGGTATACGCAGCCTCTAATGGGATGCGCTGAAGTGAAACTGCCTGGCGCAACGTGTGGCGGCCAGGTCAAAGGTCCCA GTTTGACCCCAGCCGGCCGGGCCTGACAACCCTTGGCGCAGGCTTTGCGCAACTGTATGTGCACACGAAGTGACAGGCAGGCCCAATCACAGGATAATGC GCCAACTTTTTCCACCGGTGCGCCTTGCGCGTGCCGACCACCGACGTGGTAGCTAATCCTTGTTTGGCCGTCTGAGCCTGACAACCCTGGAGTGTCCGGT
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| DNA Sequence for Gene |
>PMM47T1_17680
TTGATCGTCTTCCGTTATCTGTCCCGCGAAGTCATGCTCACCCTCAGTGCCGTCAGTGCGGTACTGCTGGTGATCATCATGAGCGGGCGCTTCGTCAAGT ACCTGGCCCAGGCCGCTTCCGGCGCCCTGGACCCGGGTGTGCTGTTCCTCATCATGGGCTATCGCCTGCCGGGCTTCCTGCAGTTGATCCTGCCACTGGG GCTGTTCCTCGGCATCCTGCTGGCCTACGGCCGCCTGTACCTGGAAAGCGAAATGACCGTGCTGGCCGCCACCGGCATGAGCCAGCAGCGCCTGCTGGCC ATCACCATGGTGCCGGCTGCCCTGGTGGCCGCGCTGGTCGCCTGGCTGAGCCTGAGCCTGGCGCCGCTGGGCGCCCAGCAGTTCTCGCTGGTGCTCAACC AGCAGGACGCCATGACCGAATTCGATACCCTGGAGCCGGGCCGCTTCCAGGCCCTGCGCGATGAAAGCCGGGTGACCTACACCGAGAGCATGAGTGACGA CCGCATTAACCTGGGCGGCGTGTTCATTTCGCAGAAGCGCCTGGGCCAGGACGCCAAGGACCGAGGCATTACCCTGTTGCTGGGGGAGAAAGGCCGCCAG GAGCGCCGCCCCGACGGCAGCCGCTACCTGATCCTGACCAATGGTTTCCGCTACGACGGTATCCCCGGCCAGGCGGATTATCGCGCCATCAAGTACGACA CCTACGGCGTGATGCTGCCCAAGCCCGAGGTCAGTGAAGAAGTCACCGACCGCGACGCCATCCCTAGCAGCAAGCTGTTTTCCGGCGAGGCGAACGACCC GGCCGAACTGCAATGGCGCCTGTCGCTGCCCTTGCTGGTATTTATTGTGACCCTGATGGCGGTCCCGCTGGCTCGGGTCAACCCGCGCCAGGGGCGCTTC CTCAAACTGTTGCCGGCGATTCTTCTGTATATGGCGTATCTGACGATCCTGATCTCCGCGCGTGGCGCCATGGAAAAAGGCAAGCTGCACTCCAGCCTGG GGCTATGGTGGGTGCATGGGCTGTTCCTGGCTATCGGCCTGGGGCTGATGTACTGGGAACCGTTGCGCCTGAAAATGGCCAGTCGTCGCTCGTCGACGGA GGTGGCCCATGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCGACCGGTACATCGGCAGCAGTGTGCTGATGGCAATCCTGGCAGTGCTGGGGGTGATCCTCGGCCTGGCCACGCTGTTCGCCTTCATCGACGAAATG AGCGACATCAGCCCTACCTACGGCCTCGGTGACGTGGCCTGGTTCGTGATGCTGACCGCGCCACGGCGCCTGTACGACATGCTGCCGATGGCAGCGCTGA TCGGCTGCCTGATTGGCCTGGGAACCCTGGCCAGCAACAGCGAGCTGACCATCATGCGCGCCGCCGGCGTGTCGGTGTCGCGCATTGTGTGGGCGGTGAT GAAGCCCATGCTGGTGCTGATGGTCTGCGGCCTGCTGGTGGGTGAATACATTGCCCCGGTTACCGAGGCCAAGGCCCAGGCCGACCGTTCCCTGGCCCAG GGCATCGGTGATGCGCAAAGTGGTCGCCATGGCCTGTGGCACCGTGAAGGCCAGCAGTTCATCCACATCAACACCGTGCAGCCCAACGGCCTGCTGTATG
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| Amino Acid Sequence |
>permease
MIVFRYLSREVMLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGVLFLIMGYRLPGFLQLILPLGLFLGILLAYGRLYLESEMTVLAATGMSQQRLLA ITMVPAALVAALVAWLSLSLAPLGAQQFSLVLNQQDAMTEFDTLEPGRFQALRDESRVTYTESMSDDRINLGGVFISQKRLGQDAKDRGITLLLGEKGRQ ERRPDGSRYLILTNGFRYDGIPGQADYRAIKYDTYGVMLPKPEVSEEVTDRDAIPSSKLFSGEANDPAELQWRLSLPLLVFIVTLMAVPLARVNPRQGRF LKLLPAILLYMAYLTILISARGAMEKGKLHSSLGLWWVHGLFLAIGLGLMYWEPLRLKMASRRSSTEVAHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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