Pseudomonas sp. M47T1, PMM47T1_16605

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M47T1 contig015, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GACCGTGACCAGGAGCGTGGCGCCGACCAGGTGATTGCCTGGGGCCTGAACGCCGGCAGCCAGCAACTGGTGTACCCGGGCGCCGAACAACCGGCGCTGC GCTGGAACATCGGTGAACCGGTGCGCTTGACCCTGCGCTGGGCCAAGAACAGCGACCAGCGGCCGGTAAGCGACCCGTCGCAACCCAGCCTTGCGGTCAG CGACCTGCAGGCCGGCTGGGAGTACGATGGCCCCTGGGCCCTGCTGCGCTTGATGCGCAGCCACGACGCCAGCCAGCGCCAGCCCAACGTCGATTTCACC GAGTTCCCCCTGAGCCTGCAATTGCCGGTGCATGGCCAAGCTGCGGTGGACAACCTGGCGCGTCTGTACGTGCGGCTGTCGGTGATGAGCCAAGGCTCCA AGCAACCGCTGTCGATACAGCCCTTGCCCTGGCGCGCGCCGCAATCGCCCTACGCCAGCCTGAACCTGCCGGCACCGCTGGCCAGTAATGAGGTCGCGCC
DNA Sequence for Gene
>PMM47T1_16605
ATGACGCCTGCTGTTGCGGTTGATGTACCCGTTGTCGATGACGCACTGCTGGCTCCGTTACCCGGTGCCCAGCCCTGTGGCCCGAGCCTGCGCTACGACC TGGACTATGATCGCCTGCGCGAACTGCGCCGCGCCGATGACGACAGCCTGCCCACTGGCGTTTGGCAGCACACCAGCAAACAGGCTGACTGGGCTGCGGT GGAGAGCCTGGCCAGCCAACTGCTGAGCCTGCGCAGCAAAGACTTGATGATCGCCGCCTGGCTGGGCGAGGCCTGGTTGCACCGCCAGGGTCTGGCCGGG CTGGAGGCCGCGTTGGTATTGATTGTCGGGTTGTGCGAGCGCTACCCCGATGAACTGCACCCACAAGCGCAGGAGGGTGACCAGTCCTGGCGCGTCACGC CGCTGGACTGGCTGGTGCGCCGTTACGCCGAAGTGGTGCTAGTGAACCTGCCGCTATTCGATGAGCCGCAGGCGCCCACGCTTTACGCCTGGCAGCAATT GCAGCAACAGCAGGTGCAGGCCAACGACAGCAAGGCGGCCAAGGTTCGCGCTGAAGAGGCCGTGCTGCAACGCAAAAAATGGCTGGAGCGCCTTCGCGCC GTGCCGGTTGGCCAGTGGCGGGCCGGGCTCGAGCACGTGCACCGAAGCCAGGTGTCACTGGCGCAACTGGAACAGTGGGGTGACACGTGGCTGGGGCTGC TGGCCCCCACGGTGGCGCCGCTGCGTGAAGTGACCAAGGCCTATGCGGCGCTGCTCAAGGAATTTACCGCCATGCACCCATCCGCTACCGTCGACAGCGT GGTCGAAACGGCCCTGGCCGTGACCCCGACGGCGCCCGAACCGCAGCCGACCATTCCCGCCGGTGTGCCGGCGAACCGCGAGGACGCCTACCGTCAACTC ACGCTCATCGCCGACTTCCTAGCCCGCACCGAGCCTCACAGCCCGGTGCCGTATCTGATCAAGCGCGCGGTGGAATGGGGGCACAAGCCGCTCAATGAGT TGTTGTCGGAACTGATCAGCGCCGACGCCGAGGCGCGCCGGGTGTGGACGTTGATGGGCGTATTGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGCTGGATGACGCAGTTGTACGATGACCGACCGTCTATCGTTTGCTTGCTCACAGATGTGGAATTAACCAAACGGTACATGTAAAATCGCTCGCATTCG GCCAACGAGCCGCAGGAGCATGCCTCCTTCCTTCTTATAAAAAAGCCCGTCCATGCGACGGGCTTTTTCGTTTCCGCTTTTTGATTCACAGCCGCGCACG GACTGCGCATTCCTGTACCTTTTATAGAGAGACTGACACCCATGCTGCGCCTGGTCCTGCTTTTCCTGTTGCAAACGTTCCGCCGCCTGTTCACCGGCAA CTCCGTCAGCCCGCGTGCCGAGCTGCAAGGCAGCCACGCCGACAGCGACGAAGGCCGCTGGACGGCGAGCGCCATCATGATCATCTGCGCCTTGGTGATC TACATCATCGGCGGCCTGGGCCTGTACGGCAAAACCCACGTGTGGGACACCCTGACCCCGGCGCAGAAAGACTTCATTGTGCAGTCGATGATCACTGACC
Amino Acid Sequence
>type VI secretion protein
MTPAVAVDVPVVDDALLAPLPGAQPCGPSLRYDLDYDRLRELRRADDDSLPTGVWQHTSKQADWAAVESLASQLLSLRSKDLMIAAWLGEAWLHRQGLAG LEAALVLIVGLCERYPDELHPQAQEGDQSWRVTPLDWLVRRYAEVVLVNLPLFDEPQAPTLYAWQQLQQQQVQANDSKAAKVRAEEAVLQRKKWLERLRA VPVGQWRAGLEHVHRSQVSLAQLEQWGDTWLGLLAPTVAPLREVTKAYAALLKEFTAMHPSATVDSVVETALAVTPTAPEPQPTIPAGVPANREDAYRQL TLIADFLARTEPHSPVPYLIKRAVEWGHKPLNELLSELISADAEARRVWTLMGVL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site