Pseudomonas sp. M47T1, PMM47T1_16575
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig015, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTTGTGGTCGGCATCCTCGCCGACCTGGCAGGCAAATCCCTGAAAGACCAAGGCAAGCTGGGTGAGCGCCGCTTCGTCGAGATCGACCGCGACAACTTC AACGACGTCATGGCCTCCATCGCCCCGCGCGCCACGTTGCTGGTCAAGAACACCCTGGCCAAGCAGCCCGATGACAAGGAACAGATCAACGTCGCCCTCG ATTTCAAGCACATCGACAGCTTTTCGCCGCTGGAAATCGTCAAGCAAGTGGCCCCGCTCAACCGCCTGCTGGTAGCGCGCCAACGCCTGCGCGACCTGCT GACCAAGCTGGACGGCAACGACACCCTCGACTCGCTGTTGCACGACATCGTGGCCAACACCGAAGAGCTGCAACAGCTCAAGGCGGCCCACGCTGGCAAC GACTCGCAGATCGCCCTGGACGCGCCGGCCAGCGAGCCGGGCGCTGCTCCCGATGCCGAGCCCACCGCCTGATTCCTGACCCTTTCAAGGAGGATTTGCC
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| DNA Sequence for Gene |
>PMM47T1_16575
GTGCCCAACTCATCAACTGCCACTGCCACTCAGGTTACCGAGAATCCCGCCACCGAGGTACTGTCCTTGCTGGACAAGATCGTTGCCGACGGGCGCATGG CCCATGACGCCAGCCAACAGGTCTATGCCCGCGACATGCTCGCCGAGTTCGCCACCCAGGTGCTGGACGAGGAGCTCAAGGTCGACAAAGGCACCGTGGC CATGATCAACGACCGCATCGCCCAGATCGACGCATTGATCAGCGAACAGCTCGACGAGATCCTGCACCACCCCGACCTGCAGAAACTCGAAGCGTCCTGG CGCGGCCTGCACCTGCTGGTGCAGAACACCGAAACCAGTTCGCGGCTCAAGTTGCGCCTGCTCAACGTTACCCAGACAGAACTGAAGAACGACCTGGAGA AAGCGGTCGAATTCGATCAGAGCGCATTGTTCAAGAAGGTCTACGAGGAAGAATACGGCACCTTCGGCGGCCACCCATTCAGCGTGCTGGTAGGCGACTA CAGCTTTGGCCGCAACCCGGAAGACATTGGCCTGCTGGAAAAACTGTCCAACGTCGCCGCCGCGGCCCATGCGCCCTTCATCGCCGCCGCCGACCCGCGC CTGTTCGACATGAGCAGCTTCACCGACCTTGCCGTGCCACGGGACCTGTCCAAGGTGTTCGAAAGCGCCGAACTGATCAAATGGCGCTCGTTCCGTGAAA GCGAAGACTCGCGCTATGTGTCGCTGGTGCTGCCGCACTTCCTCCTGCGCCTGCCCTACGGCCCCGACACCTCGCCAGTGGACGGCATGGATTACCGCGA AGACGTCAACGGCAGCGACCACGGCAAATACCTGTGGGGCAACGCTGCCTGGGCACTGAGCCAGCGCATCACCGAGGCGTTTGCCCAGTATGGCTGGTGC GCGGCCATTCGTGGCGCCGAAGGCGGTGGCGCGGTGGAAGGCCTGCCCACCCATACCTTCCGCACCAGCTCGGGCGACATCTCGCTCAAGTGCCCCACCG AAGTGGCCATTACCGACCGCCGCGAGAAAGAGCTCAACGACCTGGGCTTCATCGCCCTGTGCCACAAGAAGAACACCGACCTGGCGGTGTTCTTCGGCGG CCAGACCACCAACAAGGCCAAGGTCTACAACACCAACGAGGCCAACGCCAACGCCCGCGTGTCGGCGATGCTGCCGTATGTGCTGGCCGCCTCGCGCTTT GCCCACTACCTGAAGGTGATCATGCGCGACAAAGTGGGCAGCTTCATGACCCGCGACAACGTGCAGACTTACCTCAACAACTGGATCGCCGACTACGTGC TGATCAACGACAACGCGCCCCAGGAAATCAAGGCCCAGTACCCGCTGCGCGAAGCCCGCGTGGACGTCACCGAGGTGGCGGGCAAGCCGGGCGCCTACCG TGCCACGGTGTTCCTGCGCCCGCACTTCCAGCTGGAAGAACTGACTGCATCGATCCGCCTGGTGGCTACCCTGCCGCCACCGGTCGCCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCACGCCTGCCCCGCCGACCCCGTCGGCGGGTTTCTTCTGCCTGATACTTTTCGGAGCCACACGCAATGGATGCAATCATTCTCGACCTGGGCGGCGAC ATCAAGGGCGACAGCCTGCTGGAAGGCTACACGGACAAGATCGAAATCATGTCCTACAGCCACAACGTGGCCATGCAGGTCACCAACGACGTCAGCAACT CGGAACGCACCTCGGGCAAACCCCATGTGGGTGAGTTCACCCTGACCAAGTTCGTTGACTCCTCTACCCCTTCGCTCAATGAATACTGCTGCGCCGGCAA GCCGCTGCCCGAAGCCAAGATCACCATCGGCCGCAACGCCGCCGAAGGCGACGGCAAGCTGCTGCCGTTCATCATCTACACCCTCAACAACGTGGTGCTG TCCAACGTCAGCGTCAGCGGCGGTACCGGCGGCAAACCGGTGGAGACGATTTCGTTGAATTTCACCAAGATCAAATGGGAACTCACCGCACAGAAAGACG
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MPNSSTATATQVTENPATEVLSLLDKIVADGRMAHDASQQVYARDMLAEFATQVLDEELKVDKGTVAMINDRIAQIDALISEQLDEILHHPDLQKLEASW RGLHLLVQNTETSSRLKLRLLNVTQTELKNDLEKAVEFDQSALFKKVYEEEYGTFGGHPFSVLVGDYSFGRNPEDIGLLEKLSNVAAAAHAPFIAAADPR LFDMSSFTDLAVPRDLSKVFESAELIKWRSFRESEDSRYVSLVLPHFLLRLPYGPDTSPVDGMDYREDVNGSDHGKYLWGNAAWALSQRITEAFAQYGWC AAIRGAEGGGAVEGLPTHTFRTSSGDISLKCPTEVAITDRREKELNDLGFIALCHKKNTDLAVFFGGQTTNKAKVYNTNEANANARVSAMLPYVLAASRF AHYLKVIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVTEVAGKPGAYRATVFLRPHFQLEELTASIRLVATLPPPVAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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