Pseudomonas sp. M47T1, PMM47T1_15236

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M47T1 contig013, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGACCGAGTGTGCGCAGCCCTTCAGGGCTGCCCAGGGGTGAGGGCGGTGAAGCCTGCGGGCGGCATGTTCGTGATGGTCGACATCCGCGAAACCGGCCTC AGCGCCCAGGCCTTCGCCGACCGGCTGCTGGATGAGCATGGCGTGTCGGTGCTGGCAGGAGAAGCGTTCGGCCCCAGCGCGGCAGGGCATGTGCGCATGG GCTTGGTGCAGGATGCCGACCGCCTGGAAGAGGCGTGCCGGCGCATCGCCCGCTGTGCAGCAGCGATAGTGGGATAAATCGCACCCCCTTACTATGGCAG CGAAGCCATGTAACGTATTTGTGACCAAATATCATCCGCAAATAGGATGTATATGTAATTGATAGGCAATATCATTAGCGTTGAAGGCATTGTGCTTTCA GCGAGCGTGCCGGCACCCCTGGTACGCGCTTATCACTTATCCCCTCGCAGGATCGAACATGCTCTCACCTGTATGCCAAGGCGTTCCGTTTCGGCCCACG
DNA Sequence for Gene
>PMM47T1_15236
ATGCTCGCGCTGCTGTGCTCGTTGACCCTGACGGCGCAGGCGGCCACTGTAACCACTTCGCAGGATGCGACCGAACAGCAGGGTGCCGGCGCCCTGCAGC TCAGTGACGTCAACATCTCTGCGCAGTCGTTGACTGCCGCGCCTTCGCTGCCCGCCGTCTACGCCGGTGGCCAGGTGGCAAGAGGAGCGCAACTGGGCGT GCTGGGTAACCAGGACATCATGGACACGCCGTTCACCAGCACCGCCTACACCGCGCAACTGATCGAGAATCAGCAGGCCGAGAGCATCGGCGACGTGTTA CTCAACGATTCGTCGGTGCGCCAGGCCTCGGGCTACGGCAATCAGGCCCAGGTCTTCATGATTCGCGGCTTGCCCCTGGCCACCGATGACATCTCCTTCA ACGGCCTGTACGGCATGCTGCCGCGCCAGATCATATCCACCGACGGCATCGAGCGGGTGGAGGTGTTCCGCGGCCCGAGCGCATTCACCAACGGCATCAC CCCCACCGGTACCGGCCTGGGTGGCTCGGTGAACCTGCAACCCAAGCGCGCCGACGACACGCCCTTGCGTCGCCTGACCACGGATATTTCCAACAATGGC CGCATCGGCGAGCACCTGGACATTGGCCAGCGCTTCGGCGAGGACAACCAGTTCGGCGCGCGGGTGAACATTGCCCAGCGCAGCGGCAACACCGGCGTCG ACCACGAAAGCCAGGCCGAGCAGGTGTTCACCGCAGGCCTGGATTACCGCGGCGACCGGCTGCGCTTGTCCGCTGACCTGGGCTACCAGAAGGAAGACAT CGACGGCGGCCGCAATTCGGTGTTCCTCGGCAGCGCCACCAAGGCCCCGAAGGCGCCATCGTCCACCACCAACGCCAACGCCAAATGGGCCAACACCACG CTGGAAGACACCTACGGCATGCTGCGTGGCGAGTACGACCTCAACGACAACTGGACGGCCTACGCGGCGGGTGGCTACAAGCACACCCGGGAGAACGGTC GTTATTCGTCGGTGACGCTGACTGACAACGTGGGTGATGCCACGGTTTCAGGCTCCAAAATTCCTCACGACGAGGACAACACCAGCTTTTCCGCCGGCCT GAACGGCAAGTACCAGACGGGCTCCATCAGCCACCGTCTCAACCTCGGCATGGCCGACATCTGGGCGCAGCAGCGCAGTGCCTACGATTTCGACCTGGTG GGTGCCTCAACCAATCTTTATCAACCAGTATCCACGGCCAAGCCTGATTACAACTACCCGGGCGGCGACATGAGCGACCCGGGGATCATCGGCAAGACCT TCAACCGCAGCCTCGCGGCTTCGGATACGTTGGGCTTGCTGGATGACAAGGTGCTGTTTACCGCTGGCTTGCGTCACCAGCAATTAGTGGTTCAGGGCTA CAGTTACGCTGACGGCGCCAAGGACGCTGGCTACGACAAGTCGATTACCACCCCGGTGTTCGGTATTGTCATCAAGCCGTGGGATCATGTGTCGTTCTAC GCCAACCGCATTGAAGGCCTGGCCGCAGGTGAGACCGCAGGCTCATCGCTGGCGGGCTACACCTATACCAACCCCAATGAAACCTTTGCGCCAGCCCGAA CCAAGCAGGTGGAAGCCGGCGTGAAGGTAGACATGGGTACCTACGGCGCAACGCTGGGTGTTTACCGTATCGAAGAGCCTACCGGTGGCTATACCGAAAC GGACGCAGTCAATAAGACGGCCACCTTCGTGGTCGACGGCACCCAAATCAACAAAGGCGTCGAATTCAACGCCTTCGGCGAGCCGGTCCCGGGCCTGCGC ATCCTGGGCGGCGTGACCGTGATGAAAACCCGTGTCGAAGACACCCAGAACGGTACCGACGACGGCAACCGTGCCATTGGCGTGCCCACCTTCCAGCTCA ACGCTGGCGTGGACTGGGACGTGCCAGGCCTGGAGGGCGTATCGTTGAATGGCCGTATGCTGCGCACCGGTGGCCAGTACGCCGACGCCGACAACACCAT CAGCCTGCCCACCTGGAACCGCTTCGACATGGGCGCGCGCTACGGCTTCAAGGTCGACCAGCGCGACGTAGTGCTGCGTGCCACCGTAGAGAACGTGTTC AACAAGGACTACTGGGCCTCCGCCCAGGGCGGTTATCTGACTCAGGGTGACCCGCGGGTGATGAAGCTCTCCGCCTCGGTGGATTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCTCGATCCTTAGCCGCTGCCGCCAGGCGGCGGCGACAAGATTGCGCCATTGCCGGGATGTAGACCTACACGCTGGTTGGATCGGTCTTGGTTGCATCA ATGCCCAGCGCCGACAACGCCCCGGCCACCACCCCACGCTCGATCACGCCGTCATCGGCCAGCGCCTTCAGCGCCGCCAGCACGACGAACTGCCTATCCA CCTCGAAATGCCTACGCAACGCCTCGCGGGTGTCCGACTGGCCGAAACCGTCGGTGCCCAGCGCCACGAACCGTCGGCCGTGCACAAGCGGACGGATCTG GTCGGCAAAGATCTTCATGTAATCCGTCGCCACCACCACCGGGCCTTTGCGGCCGTGCAGGCAGGTTTCCACGTGGGACCGGCGTGGCTCGGCCATCGGG TTCAGCAGGTTCCAGCGCTCCACCACCTGGCCCTCGCGGCGCAGTTCCGTGAGGCTGGTGGCGCTCCATACGTCACTGCTCACGCCATAGTCTCGCGCCA
Amino Acid Sequence
>TonB-denpendent receptor
MLALLCSLTLTAQAATVTTSQDATEQQGAGALQLSDVNISAQSLTAAPSLPAVYAGGQVARGAQLGVLGNQDIMDTPFTSTAYTAQLIENQQAESIGDVL LNDSSVRQASGYGNQAQVFMIRGLPLATDDISFNGLYGMLPRQIISTDGIERVEVFRGPSAFTNGITPTGTGLGGSVNLQPKRADDTPLRRLTTDISNNG RIGEHLDIGQRFGEDNQFGARVNIAQRSGNTGVDHESQAEQVFTAGLDYRGDRLRLSADLGYQKEDIDGGRNSVFLGSATKAPKAPSSTTNANAKWANTT LEDTYGMLRGEYDLNDNWTAYAAGGYKHTRENGRYSSVTLTDNVGDATVSGSKIPHDEDNTSFSAGLNGKYQTGSISHRLNLGMADIWAQQRSAYDFDLV GASTNLYQPVSTAKPDYNYPGGDMSDPGIIGKTFNRSLAASDTLGLLDDKVLFTAGLRHQQLVVQGYSYADGAKDAGYDKSITTPVFGIVIKPWDHVSFY ANRIEGLAAGETAGSSLAGYTYTNPNETFAPARTKQVEAGVKVDMGTYGATLGVYRIEEPTGGYTETDAVNKTATFVVDGTQINKGVEFNAFGEPVPGLR ILGGVTVMKTRVEDTQNGTDDGNRAIGVPTFQLNAGVDWDVPGLEGVSLNGRMLRTGGQYADADNTISLPTWNRFDMGARYGFKVDQRDVVLRATVENVF NKDYWASAQGGYLTQGDPRVMKLSASVDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site