Pseudomonas sp. M47T1, PMM47T1_14481
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig012, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGCATTCTCTATGAGAGCTACGTGCACCCGCTCACCATCCTCTCGACCCTGCCGTCGGCGGGGGTGGGCGCGCTGTTGAGCATTTACGTGA CCGGCGGCGAGTTCAGTCTGATCTCGCTGCTGGGCTTGTTCCTGCTGATTGGCGTGGTGAAAAAGAACGCCATCCTGATGATTGACCTGGCGCTGCAACT GGAGCGCGAGCACGGCATGGGCCCGCTGGACTCGATTCGCCAGGCCTGCCTGCAACGCCTGCGGCCAATCCTGATGACGACGTTGGCGGCGATCCTCGGC GCGCTGCCGCTGCTGATGGGCGGCACCGAAGGCGCCGAAATGCGCCAGCCGCTGGGCCTGACCATCATCGGCGGGCTGGTTTTCAGCCAGATCCTGACCC TGTACACCACGCCGGTGGTGTACCTCTACCTTGACCGCTTGCGCCACCGCGTCAACCACTGGCGCGGCGTACGTACCGATGCATCCCTGGAAACCCCGCT
|
|
| DNA Sequence for Gene |
>PMM47T1_14481
ATGACCAAGCTGATCGTGCCGCGCCCCCTGACCTGCCAGATGGCCACCGCCCGTGGTTCGTGGGTGCTCAACCTGGGCCTGAGCACGATGATGCTCGCAG GCCTGCTGCTGGGCGGTTGCGCCGTGGGCCCCGACTACAAGCGCCCGGATGTGGCGGCGCCGGCGCAGTTCAAGCAAGCCCAGGGCTGGCGCCAGGCGCA GCCCAGCGATGCCCTGGCGCGGGGTGCCTGGTGGGAGGTTTACGGCGACGTGCAGCTTAACGGCCTGGTGGAGCGCCTGAACCACTCCAACCAGACCGTG GCGCAATATGAAGCGCAGTACCGGCAGTCCCAGGCGCTGGTGAAAAGCGCCCGGGGTGCGTTTTTCCCCACCGTGGACCTCAGCGCCAGCAAAAGCCGCT CAAGCCAAGGCACCGGCAGCAGCAACTCCAGCCTGGGCAGCGCCAGCAGCGGCATTCGCAACACCTACAACGCCCAGGCCAACGTCAGCTGGGAGGCCGA CGTGTGGGGCAAGTTGCGCCGTGGCCTGGAAGCCGACAAGGGCAGCGCCCAGGCCAGCCTCGCCGACCTGGCTGCCATGCGCCTGAGCCTGCAGTCGGAG CTGGTGCAGAACTACCTGCAGCTGCGCGTGATCGATGAACAGAAGCGCTTGCTGCAGGCTACGGTGGAAACCTACCAGCGCTCGCTGACCATGACGCAGA ACCAGTACCGGGTTGGCGTTTCTGGCGCCGATGCAGTGGCCCAGGCGCAAACCCAGCTGCGCACCACCCAGGCCGACCTGGTGGACCTGGCCTGGCAGCG CGCCCAGTACGAAAATGCCATTGCCGTGCTAATGGGCGTGCCGCCGGCCGACTTCAACCTGGCCGAAACCAAGGCCATCCCGGCCTTGCCGGCAATCCCG GTGCAGGTCCCGTCCCAGTGGTTGGAGCGGCGCCCCGACATCGCGGCCGCCGAACGTTCGGTGATGGCGGCCAATGCCAACATCGGCGTGGCCAAGAGTG CCTACTTCCCGGACCTGACCCTGAGCCTGTCAGGCGGGTACAGCAGCAGTACCTTCGCCAACTGGCTGACCCTGCCCAACCGCTTCTGGTCGGTGGGCCC GCAATTGGCCGGCACCCTGTTTGATGGCGGCCAGCGTTCGGCGGAAGTGGAGCGTACCGAGGCGGTCTACGACCAGACCGTTGCCCAGTACCGCCAGACC GTGCTCAACGGTTTCCAGGAAGTGGAAAACTACATGGTCCAGCTCAAGGTCTACGAGGACGAGGCCCAGGTGCGCCAACAGGCGCTGGAATCGGCGCGGG AGTCCTTGCGCCTGACCACCAACCAATACAAGGCGGGGCTGATTGCCTATCTTGATGTGGTGACCGTTCAAGCCACTGCCCTGGGCAACGAGCGCAGTGT CCTGAACGTGCTGCAAAGCCGCCTGGTGGCCAGCGTGCAGTTGATCGCCGCGCTGGGCGGTGGCTGGGACGGGCAAATGGATTTAACGCGCAGTCCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGCCGTCCGTCTGAAAGGTTAAGGTCTGTCTTGCCCTTGTACAAGGCTGTACAGGGGCTAGACCCTTGTAGAAGCTGGGCTCGGTAGTGGCATAGCGATA TCGCGCCAGCCCCCGACAGTCACGCGCTCTTCCCAAGCAAACAAGCGTTTAATTGCGTACAATCCTGCGCCATTCATTAGGCAGGGAACGCGTCGGATTT GCAGGTTCAGAGTGTCGCATGCTGATTGGTAGCTATTCCCCCTCCCTGGTAATCATCTCGCTGTGCGTGGCCATGCTGGCCTCGTACACGGCGCTGGATC TGGTTGGCCGCATCGCCACCGCCAGGGGCCGGGCAGTGTACTTCTGGATGGGGGGTGGTTCGCTGTCGATGGGGGTGGGCATCTGGTCGATGCACTTTAT CGGCATGCTCGCCTTCAGTCTGCCCATCGACGTGGGCTACGACCTGAAGCTCACAGGGCTGTCCTTGCTGATTGCCATTTTGTCATCGGGCTTTGCCCTG
|
|
| Amino Acid Sequence |
>RND transporter
MTKLIVPRPLTCQMATARGSWVLNLGLSTMMLAGLLLGGCAVGPDYKRPDVAAPAQFKQAQGWRQAQPSDALARGAWWEVYGDVQLNGLVERLNHSNQTV AQYEAQYRQSQALVKSARGAFFPTVDLSASKSRSSQGTGSSNSSLGSASSGIRNTYNAQANVSWEADVWGKLRRGLEADKGSAQASLADLAAMRLSLQSE LVQNYLQLRVIDEQKRLLQATVETYQRSLTMTQNQYRVGVSGADAVAQAQTQLRTTQADLVDLAWQRAQYENAIAVLMGVPPADFNLAETKAIPALPAIP VQVPSQWLERRPDIAAAERSVMAANANIGVAKSAYFPDLTLSLSGGYSSSTFANWLTLPNRFWSVGPQLAGTLFDGGQRSAEVERTEAVYDQTVAQYRQT VLNGFQEVENYMVQLKVYEDEAQVRQQALESARESLRLTTNQYKAGLIAYLDVVTVQATALGNERSVLNVLQSRLVASVQLIAALGGGWDGQMDLTRSP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|