Pseudomonas sp. M47T1, PMM47T1_12396 (lolA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig09, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACCAGGGTGGCGCGGAGCAACTGCTGGGTCACGGTGACATGCTGTACATGCCGCCCGGCACCAGCCTGCCGATCCGTGTGCACGGTGCGTTCGTGTC CGACGAAGAAGTGCACCGCGTGGTGGAAGCCTGGAAACTGCGTGGCGTGCCGGACTACAACGAAGACATCCTGGCCGGCGTCGAAGAGGCCGGCAGCGGC TTCGAAGGCGGCAGTGGCGGTGGTGACGAGGACAGCGAATCCGATGCGCTCTACGACGAGGCGGTCAACTTCGTTCTGGAAAGCCGTCGGGCGTCCATTT CCGCGGTGCAGCGCAAGCTGAAGATTGGCTACAACCGCGCCGCTCGCATGATCGAGGCGATGGAAATGGCCGGCGTGGTCACCCCCATGAACACCAACGG TTCGCGCGAAGTCATCGCGCCGGGCCCAATGCGCGACTGATCGACACAACGGGTCGCTGATGAACAGCGACCAGTCCTATTCTTTTGTACGAGGATTCCC
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| DNA Sequence for Gene |
>PMM47T1_12396
|lolA
ATGCGCCTGATTCGCATGCTGTTGGTTTCTGCTCTGGCCTTCTCCACGATCCCGGCCCACGCCGACGACGCCTCGGTGAAAAGCCTGACCCAGTTGCTGG AAAAGTCCAACACCCTGGCCGCGCACTTCTCGCAACTGACCCTGGACGGCAGCGGTACCCAGTTGCAGGAAACCGCCGGTGAAATGACCCTGCAGCGCCC GGGCCTGTTCTATTGGCACACCGACGCGCCGAACGAGCAGACCATGGTTTCGGATGGCCAGAAGGTCTCGCTGTACGACCCGGACCTGCAACAGGTGACC ATCAAGAAGCTGGACCAGCGCCTGACCCAGACCCCGGCCCTGCTGCTGTCCGGTGACATCTCCAAGATCAGCCAGAGCTTCGACATCACCTCCAAGGAAG CGGGCGACGTGATTGACTTCATGCTCAAGCCCAAGACCAAGGACACCCTGTTTGACTCCCTGCGCCTGTCGTTCCGCAAGGGCCTGATCAATGACATGCA ATTGATCGACAGCGTGGGCCAGCGCACCAACATCCTGTTCACCGGCGTCAAGGCCAATGATCCGGTCGACAAGAGCAAGTTCACCTTCGTCGCGCCCAAG GGCACCGACGTGATCCAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGGACCGCACGCCCGTCATGGACCTGTTTCGCAGTGAGCCCATCGCCCAGCCCCTGGCTGCCCGCCTGCGGGCCCGCAACCTGGACGAATACGTGGGCC AGGAACACCTGCTGGCGCGCGGCAAGCCGCTGCGCGAAGCGCTGGAGCAGGGTGCGCTGCATTCCATGATCTTCTGGGGCCCACCGGGGGTGGGCAAGAC CACCCTGGCGCGGCTGCTGGCAGAAGTCTCGGACGCCCACTTCGAAACCGTTTCCGCGGTGCTGGCGGGGGTCAAGGAGATTCGCCAGGCGGTCGAGGTG GCCAAGCAGCAGGCCGGCCAGTACGGCCGCCGCACCATCCTGTTCGTCGACGAAGTGCACCGCTTCAACAAGTCCCAGCAGGACGCCTTCCTGCCCTACG TGGAAGACGGCACGCTGATTTTCATCGGTGCCACCACCGAAAACCCTTCGTTCGAACTCAACAACGCGTTGCTGTCGCGGGCACGGGTGTACGTGCTCAA
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| Amino Acid Sequence |
>membrane protein
MRLIRMLLVSALAFSTIPAHADDASVKSLTQLLEKSNTLAAHFSQLTLDGSGTQLQETAGEMTLQRPGLFYWHTDAPNEQTMVSDGQKVSLYDPDLQQVT IKKLDQRLTQTPALLLSGDISKISQSFDITSKEAGDVIDFMLKPKTKDTLFDSLRLSFRKGLINDMQLIDSVGQRTNILFTGVKANDPVDKSKFTFVAPK GTDVIQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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