Pseudomonas sp. M47T1, PMM47T1_09796

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M47T1 contig06, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGCAACCCGGCCGACCAGCACTCGTTCATCATCACCGAAGAACTGGCGCCCACGGTCAGCCTGGAAGATTTCAGCATCAACTGGCGCACTGAGCCACCGC AGCCGCGCCTCAAGCGCGCGCTGATCGACGAGGTGGCGCGCATGGTCGGGATGATGCACCGCGCCGGGGTCAACCACCGCGACTGCTACATTTGCCACTT CCTGCTGCACACCGACAAACCGGTGACGCCGGATGACTTCAGGCTCTCGGTCATCGACCTGCACCGCGCCCAGACCCGTCCGGCCATTACCCGCCGCTGG CGCAACAAGGACCTGGCCGCGCTGTATTTTTCGGCGCTGGACATCGGCCTGACTCGCCGCGACAAGCTGCGTTTCCTGCGCGGTTACTTCCAGCAACCGC TGCGGCAGATCCTCAAGGAAGAAGCACGCCTGCTGGCCTGGCTGGAGGGCAAGGCGGAAAAGCTCTATGCCCGTAAACTTCGCTACGGGGACGCGCTCTG
DNA Sequence for Gene
>PMM47T1_09796
ATGGCCGGTTGGAACCTTGACCCTGGCTACGCGCACCTGCAAGCCGAATTCGGCACCCTGGACGCGGTGTTCGCGCTCAAGGGTGAACACCTGACCCGCG ACCCTCTGTCGGAGGTCAGCCGCGTCAACATTGGCGGAGTGAATTACTACGTCAAGCGCTACACCGGCGCCGGCAAAGGCTTGCGCCGCTACTTGGGCCG GCCACGGGTGAAGTCCGAGTGGCAGAACCTCAAGCGCTTCGCCAAGTGGGGCATTCCCACCGCAGAGATCGTCGGCTGGGGCCTTGAGCGCAAAGGTGCA GCCTTCCATCGCGGCGCGCTGATCACCCGCGAGCTGGCCAATACCGAGGACATGTCCGCGCTGGCCGACAATCACGATCCGCGCCTGAAAGACCGCAGCT GGGTGGATGGCATTAGCCAGCAACTGGCCCGTGCCACCCGTGCCATGCATGACCAGCACTTCACCCATAACGACCTGAAGTGGCGCAACCTGTTGGTGGA CGACAAGAACACCCTGTTCTTCATCGACTGCCCCAATGGCGCATTCTGGATCAGCTTCTGGCTTCGCTACCGCATCACCAAGGACTTGGCCTGCCTGGAC AAGGTGGCCAAGTACCAACTGTCCAACACCCAGCGCCTGCGTTTCTACCTGCAATACCGCCGCCGTCAGCGCCTTAATGCGTCCGACAAGCGCCGTATCC GTCACATCATCACGTTTTTCGAGGGCCGCGAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGACTTCTTCGCTGACGCCGAGCGCGGCTTGCTCGAGCGCCATGGCCTGGCCAGTTTCGACACCCTGTGGACCTTGCAACTGGACCCGGTGGACGAGCC CAACACGGCCCGCGGCGGTTACAGCCAGGTGTTTCGCCTGGAGCTGGAGGGTAAAGGGTTCTACCTCAAGCGCCAGCGCGGCTACCTGACCCGAACCTTG CACCATCCGTTCGGCGAGCCGACGTTTTCTCGCGAGTTTCGCAATATCCGCCGTTATCAGCAGTTGGCGATCCCGGCGCTGCAGGCAGCCTACTATGGCG AGCGCAAACTTGAGGGCGACCGCTGCGCCATCCTGATGACCCGCGCCCTGGACGGCTGGACCGACCTGGATGGTCTGCTGGTGGAGTGGGGCAGCAGCAC CGCAGCGCGGCGCCAGGCCATCCTGGCTGCATGCGGTACCTTGGCGCGCACGCTGCACGGCGCCGGCCAGGTGCACGGCTGCTTCTACCCCAAGCATATT
Amino Acid Sequence
>lipopolysaccharide core biosynthesis protein
MAGWNLDPGYAHLQAEFGTLDAVFALKGEHLTRDPLSEVSRVNIGGVNYYVKRYTGAGKGLRRYLGRPRVKSEWQNLKRFAKWGIPTAEIVGWGLERKGA AFHRGALITRELANTEDMSALADNHDPRLKDRSWVDGISQQLARATRAMHDQHFTHNDLKWRNLLVDDKNTLFFIDCPNGAFWISFWLRYRITKDLACLD KVAKYQLSNTQRLRFYLQYRRRQRLNASDKRRIRHIITFFEGRE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site