Pseudomonas sp. M47T1, PMM47T1_07091

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M47T1 contig04, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCCCGCTGGACTCTCCGCCTGTCGCCAGCAACTTCCCGCGCCGCAACCGCATCATCAGCGCAATGTCGCTGGGCGTGCTGGTGGTGGAAGCCAGCGTGGC CAGCGGTTCGCTGATTACCGCACGCCTGGCTGCCGAGCAGGGCCGCGAGGTATATGCCATTCCCGGCTCCATTCACCACCCGGGTGCCAAGGGCTGTCAT CAGTTGATCCGAGATGGCGCGCAGCTGGTGGAAACCGTGGAGCACATTCTTGAACCGTTGCGCGGTTGGCAACGAACTGCCGCGTACTGCCCGCAGCCGG GCCATCCGTTGCTGGCGCTGTTGCACGCCGCGCCGCAAAGCAGTGAAGCCCTGGTGCGGTCCAGCGCCTGGCCGCTGCCGCGCGTGCTGGAGGCGCTGAC CGAGTTGGAGCTGGAGGGGCGCGTGGTGAACGAGGCCGGGCGTTGGTTTGCACGAATTAGCTAAGTACACTGCTCGCAGCATTCAAGCGGAGTAACAGCA
DNA Sequence for Gene
>PMM47T1_07091
ATGGTGAGCAGTTGGCGTGTGCAACAAGCCGCGCGTGATGTGAAAGCAGGCGCGGTGATTGCCTACCCAACCGAGGCGGTTTGGGGCCTGGGGTGCAACC CTTGGGATGCCGAGGCCGTATATCGGCTGCTGGCGATCAAGGCGCGTCCTGTGGAAAAAGGCCTGATTCTGGTGGCCGACAATATTCGCCAGTTCGACTT TCTGTTCGACGATTTCCCGGAAGTCTGGATGGATCGCATGGCCAGCACCTGGCCGGGCCCTAATACCTGGCTGGTACCGCACCAGGGCCTGCTGCCCGAG TGGATCACTGGCAAGCACGCCAGCGTGGCCGTGCGGGTCAGTGATCACCCGCTGGTGCGCGAGTTGTGCTCGCTGGTAGGGCCACTGGTGTCCACGTCTG CCAACCCGGCGGGGCGGCCCCCGGCCATGAATCGCCTGCGCATCGAGCAGTACTTCCGTGGCGAGGTGGACGTGGTACTCAATGGCCCCTTGGGCGGCCG CAAGAGCCCGAGCGTGATCCGCGACCTGGTCACCGGCGACATCATCCGGCCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCTGTAGCCGCTGTTACGGCAACAGGATAGTCGACCCCATGGTGCGCCGCGCCGACAGCTCGGTTTGTGCCTTCGCCGCTTCAGCCAACGGGTAGCGCTG GCTGATCTCCACCTCCAGCTTGCCGCTGGTGATCATCGAGAACAGCTCGTCAGCCATGGCCTGAAGCGTGCCGGCCGTGGCATAGGTACCCAGGGTTGGG CGGGTGACGTACAGCGAGCCTTTGGAGGCCAGTACCCCCAGGTTGACGCCGCTGACGGCGCCGGACGCGTTGCCGAAGCTCACCACCAGGCCACGGGGTT CCACGCAGTCGAGCGAGGTTTCCCACGTGTCCTTGCCCACGCCGTCGTACACCACTTGGCATTTCTTGCCGCCGGTCAGCTCAAACACGCGCTTGACTAC GTCTTCATGGCTGTAATCAATGGTTTCCCACGCCCCGAGTTCCTTTGCCCGAGCCGCTTTTTCCGGCGAGCTGACGGTACCGATCAGTTTTGCGCCAATG
Amino Acid Sequence
>tRNA threonylcarbamoyladenosine biosynthesis protein RimN
MVSSWRVQQAARDVKAGAVIAYPTEAVWGLGCNPWDAEAVYRLLAIKARPVEKGLILVADNIRQFDFLFDDFPEVWMDRMASTWPGPNTWLVPHQGLLPE WITGKHASVAVRVSDHPLVRELCSLVGPLVSTSANPAGRPPAMNRLRIEQYFRGEVDVVLNGPLGGRKSPSVIRDLVTGDIIRP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site