Pseudomonas sp. M47T1, PMM47T1_06991 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig04, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGTTTGAGCAGACCCTCAGTGAGCTGGTCGAGCTGGACGGGTTGACCCTCAGTTATTATCGCGGGTGGGACAAGGAACGGGACCTCTCCGAGGTGCTC GGCACTTCCCTGCTACGTGACCAACAGATGGGCCACACCCAGGCCGGACCTCAACGCGCTGACCTTCGGTTACGACTAGGCGCCCACAACGCCGCGGATA TTCTTTCCCGCGGTCAGCAAAAGCTGGTGGTGTGTGCCTTGCGTATTGCCCAGGGTCACCTGGTCAGCCAGGCTCGGCGCGGTCAATGTATTTATCTCGT GGACGACTTGCCGTCAGAACTCGACGAGCAACACCGCCGCGCACTCTGCCGCTTGCTGGAAGAATTACGCTGCCAGGTATTCATTACCTGTGTAGACCAC GAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAGGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>PMM47T1_06991
|gyrB
ATGAGCGAAAATCAAACGTACGATTCCTCCAGCATTAAAGTGCTGAAAGGGCTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGCGACACCGATG ATGGTAGCGGTCTGCACCACATGGTGTTCGAGGTCGTCGACAACTCGATCGACGAAGCCTTGGCCGGCCACTGCGACGACATCACCGTCATTATTCATCC TGACGAATCCATCACCGTCCGTGACAACGGTCGCGGCATTCCGGTAGATGTGCACAAAGAAGAAGGCGTATCCGCAGCCGAGGTCATCATGACCGTGCTG CACGCTGGCGGTAAGTTCGACGATAACTCGTACAAGGTTTCTGGCGGGTTGCACGGTGTAGGTGTTTCGGTAGTGAACGCGCTGTCCGAAGAGCTGATTC TGACCGTGCGTCGCAGCGGCAAAATCTGGGAACAGACTTACATTCACGGTGTACCTCAGGCTCCGATGAAAATCGTTGGCGAGAGCGAAACCACCGGTAC CCAGATTCACTTCAAACCTTCGGACCAGACCTTCAAGAACATCCACTTCAGCTGGGACATCCTGGCCAAGCGAATTCGCGAACTGTCGTTCCTGAACTCC GGCGTGGGCATTTACCTGAAGGACGAGCGTTCGGGCAAGGACGAGACTTTCAAGTACGAAGGCGGGCTGCGTGCGTTCGTTGAATACCTGAACACCAACA AGACTGCGGTCAACGAAGTGTTCCACTTCAACGTACAGCGCGATGACGGTGTGGGCGTGGAAATTGCCCTGCAGTGGAACGACAGCTTCAACGAAAACCT GTTGTGCTTCACCAACAACATCCCGCAGCGCGATGGCGGTACCCACTTGGTGGGCTTCCGTTCGGCACTGACCCGCAACCTGAACAACTACATTGAACAG GAAGGTCTGGCCAAGAAGCACAAGGTTGCCACCACCGGTGACGACGCCCGTGAAGGCCTGACCGCGATCATTTCGGTCAAAGTGCCTGACCCCAAGTTCA GCTCGCAGACCAAGGACAAGCTGGTTTCGTCCGAAGTGAAGACCGCGGTCGAGCAGGAAATGGGCAAGTACTTCTCTGACTTCCTGTTGGAAAATCCTAA CGAAGCCAAGGCTGTTGTCGGCAAGATGATCGACGCCGCCCGTGCCCGTGAAGCCGCGCGCAAGGCTCGTGAGATGACCCGCCGCAAAGGTGCGCTGGAC ATCGCCGGCCTGCCAGGCAAATTGGCGGACTGCCAGGAGAAGGACCCTGCCCTCTCCGAACTGTACCTGGTGGAGGGTGACTCCGCCGGTGGTTCGGCCA AGCAAGGTCGTAACCGTCGCACCCAGGCTATCCTGCCGCTCAAGGGCAAGATCCTCAACGTCGAGAAAGCACGCTTCGACAAGATGATCTCGTCCCAGGA AGTGGGCACGCTGATCACTGCGCTGGGCTGCGGTATTGGTCGCGATGAGTACAACATCGACAAGCTGCGCTACCACAACATCATCATCATGACCGATGCT GACGTCGACGGTTCGCACATCCGTACGTTGCTGCTGACCTTCTTCTTCCGCCAGTTGCCTGAATTGATCGAGCGCGGCTACATCTACATTGCCCAGCCAC CGCTGTACAAGGTGAAAAAAGGCAAGCAGGAGCAGTACATCAAGGACGACGAGGCCATGGAAGAATACATGACCCAGTCGGCCCTGGAAGATGCCAGCCT GCACCTGAACGATTCGGCACCAGGCATTTCCGGCGAAGCGCTTGAGCGTCTGGTCAACGATTTCCGCATGGTAATGAAGACCCTCAAGCGTCTGTCGCGC CTGTACCCACAGGAGCTGACTGAGCACTTCGTGTACCTGCCAGCCGTATCGTTGGAGCAGCTGTCGGACCATGCGGCCATGCAGGATTGGCTGGCGCGCT TCGACGCACGTCTGCGCAATACCGAGAAGTCCGGCCTGGTCTACAAGGCCAGCCTGCGCGAAGACCGTGAACGCAATGTCTGGCTGCCGGAAGTGGAAAT CACCTCCCATGGCCTGGCCAGCTACATCACCTTCAACCGCGACTTCTTCGGCAGCAACGATTACCGCACGGTCACCGCACTGGGCGCGCAGTTGGCTACC CTGCTGGACGAAGGCGCCTACGTGCAACGTGGCGAGCGCAAGAAGCCGGTGGTGGAGTTCAAGGAAGCGCTCGAGTGGCTGATGACCGAAAGCACCAAGC GCCACACCATCCAGCGCTACAAAGGGCTGGGTGAGATGAACCCGGACCAGCTGTGGGAAACCACCATGGACCCGACCGTGCGCCGCATGCTGAAAGTTAC CATTGAAGATGCGATCGCTGCTGACCAGATCTTCAACACCCTGATGGGTGACGCTGTAGAGCCGCGTCGTGAGTTCATTGAGAACAACGCGTTGGCTGTG TCGAACCTGGATTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCTGGTGTAATAAAAAAACCCGGCCATCGTGCCGGGTTTTTTATGGGATGTGACTGGCCCTCAACACTGTGGTGCCCCACGCATCAGCGCCAATCTCGT AGCAAGCTGCCGGAGGCGGCGTCAGTGACGCGGCCCGACGGCCGCTGCGGGTTGCCAAACACCATAAATGTCCCACAGTGGGTTCCCTGCAAGGCAGGTT CTTGGAGCAATTTACACAGGTGCCGTTCACTCCAGCATCTGGATATTCCGGGTAGCCATCACCGGCACATTATTCAGCAGGAAGTCTCGCACCCGCTCCA GCAGGTAATGCTGCGGGTTGCGTTGCGACCAGACCAGGTAATAACTGTCTCCCGTCTTCACCGCCGTGCGGATCGGCAACACCAGCGAGCCATCTTTGAG CTGCGGCCCGATCAGGGCCAGGTCGCCGATGGAAACCCCATGGCCACCCGCTGCCGCCGTCATGCCCAACTCCAGGGTGTCGAAGCGCTTGCCTTCGTTC
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYIHGVPQAPMKIVGESETTGTQIHFKPSDQTFKNIHFSWDILAKRIRELSFLNS GVGIYLKDERSGKDETFKYEGGLRAFVEYLNTNKTAVNEVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLNDSAPGISGEALERLVNDFRMVMKTLKRLSR LYPQELTEHFVYLPAVSLEQLSDHAAMQDWLARFDARLRNTEKSGLVYKASLREDRERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVTALGAQLAT LLDEGAYVQRGERKKPVVEFKEALEWLMTESTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRREFIENNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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