Pseudomonas sp. M47T1, PMM47T1_06986 (recF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig04, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCGAGCCGGACGGTACTGTGAGCATCGTTCTGGGCCAGCACCACATTCGTGCTACCACCGGCGAGTTCACCTTCACCTCCAAACTGGTTGACGGCAAA TTCCCTGACTACGAGCGCGTTCTGCCTAAAGGTGGCGACAAGCTGGTACTGGGTGACCGTCAAGCATTGCGCGAAGCGTTCAGCCGCACCGCCATTCTGT CCAACGAAAAATACCGCGGCATCCGTCTGCAACTGGCCGCCGGCCAATTGAAGATTCAGGCCAACAACCCTGAACAGGAAGAAGCGGAAGAAGAAGTGGG TGTGGACTACAACGGTGGTTCGCTGGAAATCGGCTTCAACGTCAGCTACCTGCTGGACGTGCTGGGCGTGATGACTACCGAACAAGTTCGGCTGATTCTG TCCGACTCCAACAGCAGTGCCCTGGTGCAAGAATCCGACAACGACGACTCCGCTTATGTCGTCATGCCGATGCGCCTGTAACTTGCCCAGCAGACTCTAG
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| DNA Sequence for Gene |
>PMM47T1_06986
|recF
ATGTCCCTTAGTCGTGTCTCTGTCACCGCGGTGCGCAACCTGCACCCGGTGACCTTCTCCCCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCA GCGGCAAGACCAGTGTGCTTGAAGCTATTCACTTGTTGGGCTTGGCGCGCTCGTTCCGCAGCACTCGGCTGTTGCCGGTGATTCAGTACGAACAAGGTGC CTGTACGGTCTTCGGGCAAGTCGAGCTGAACGAAGGCGGCCACGCCGCATTGGGTGTTTCACGGGAGCGGCTGGGCGAATTCACTATCCGAATCGACGGG CAGAACGCGCGCAGCGCCGCCCAACTGGCAGAGATCCTGCCGTTGCAGTTGATCAATCCGGACAGTTTTCGCTTGCTGGAAGGGGCTCCAAAAATCCGCC GGCAGTTCCTTGATTGGGGAGTGTTCCACGTGGAACCTCGCTTCATGGCCACCTGGCAAAGACTGCAGAAGGCCCTGAAGCAGCGAAACTCGTGGCTGCG GCATGGTACACTTGACGCTGCTTCGCAAGCGGCATGGGACCGGGAGTTATGCCTGGCCAGTGCTGAAATTGATGAATACCGTCGCGCCTATATCAAGGCA TTGAAACCGGTGTTTGAGCAGACCCTCAGTGAGCTGGTCGAGCTGGACGGGTTGACCCTCAGTTATTATCGCGGGTGGGACAAGGAACGGGACCTCTCCG AGGTGCTCGGCACTTCCCTGCTACGTGACCAACAGATGGGCCACACCCAGGCCGGACCTCAACGCGCTGACCTTCGGTTACGACTAGGCGCCCACAACGC CGCGGATATTCTTTCCCGCGGTCAGCAAAAGCTGGTGGTGTGTGCCTTGCGTATTGCCCAGGGTCACCTGGTCAGCCAGGCTCGGCGCGGTCAATGTATT TATCTCGTGGACGACTTGCCGTCAGAACTCGACGAGCAACACCGCCGCGCACTCTGCCGCTTGCTGGAAGAATTACGCTGCCAGGTATTCATTACCTGTG TAGACCACGAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAGGGCCGTATCACCCAGACCCACGACCATCGGGA GTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGCATGAGCGAAAATCAAACGTACGATTCCTCCAGCATTAAAGTGCTGAAAGGGCTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGCGACACC GATGATGGTAGCGGTCTGCACCACATGGTGTTCGAGGTCGTCGACAACTCGATCGACGAAGCCTTGGCCGGCCACTGCGACGACATCACCGTCATTATTC ATCCTGACGAATCCATCACCGTCCGTGACAACGGTCGCGGCATTCCGGTAGATGTGCACAAAGAAGAAGGCGTATCCGCAGCCGAGGTCATCATGACCGT GCTGCACGCTGGCGGTAAGTTCGACGATAACTCGTACAAGGTTTCTGGCGGGTTGCACGGTGTAGGTGTTTCGGTAGTGAACGCGCTGTCCGAAGAGCTG ATTCTGACCGTGCGTCGCAGCGGCAAAATCTGGGAACAGACTTACATTCACGGTGTACCTCAGGCTCCGATGAAAATCGTTGGCGAGAGCGAAACCACCG
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| Amino Acid Sequence |
>recombinase RecF
MSLSRVSVTAVRNLHPVTFSPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSTRLLPVIQYEQGACTVFGQVELNEGGHAALGVSRERLGEFTIRIDG QNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDRELCLASAEIDEYRRAYIKA LKPVFEQTLSELVELDGLTLSYYRGWDKERDLSEVLGTSLLRDQQMGHTQAGPQRADLRLRLGAHNAADILSRGQQKLVVCALRIAQGHLVSQARRGQCI YLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELLREGWQTETPVALFHVEQGRITQTHDHRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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