Pseudomonas sp. M47T1, PMM47T1_06561
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig04, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGTGGCGGTCGGTGAGCTGGCTGACCAAGGCCTGCAGGCGCTCGGCGTCACTGAACACTTCGGCGGTGCCACTGGCGTGCACCGCCAGGAAATTCCAG GTGGGCACAGCTTTGCCGTGCTCCGCCTTGCTGGGGTAGAACCCGGGGCTGACATAGGCGTCGGCGCCGCTGAAAATAACCAGTGCCTGGCTGCCGTTGG CCAGGTCCTGCCATTGCGGGTTGGCCCGCGCCAAGTGGCCGCGCAGGGTGCCGAATTCGCCTGCGGTGCGGTCCAGCAGCAACGGCACGTGGCTGGCTTG CAGGCCTTGCTCGCCGTGGGTTACCACGATGGCCAGGCGGCTGTCCTCAATCTGTTGGTGCAGGCGTTCGATGTCTTGGTCATGGAAAGCGGCGGGTAAA TACATGGCTCGATCTTCCTCGGCGTCTGTGCTTATCCTAGGCGGCGAATTGGACCTTTGTAAGAGCCATTTCCTGTCATTTTCATAGGTCCATTACCCCC
|
|
| DNA Sequence for Gene |
>PMM47T1_06561
ATGATCACTTCCCCTGCGTTGCCCTTCGACCCTGCCGGCATCCAGCTCGACGCCGGCCGCGGCCTCAGCCGCGAGTTGTATCAGGCGCTGCGCGCGCGCG TTCTGGATGGCCGCCTGGCCAGCGGCACGCGGATGCCGGCGAGCCGCGATCTGGCCCGGGCCTTAAGTGTTTCGCGCAACACCGTGGTGCGCGCCTACGA CCAGTTGTATGCCGAGGGCTTCCTGCAAGGCAGGGTGGGGGACGGCACTTATGTGGCTCGGCTTGAACCCACCCCAGAAAAACTATCCACAAAACTGTCC ACAGGGTTATACCGGGGTTTATCCACAGCCTTATCCACAAAATTGATCAAAAATACTGGCATTTCATCCAGTAAAGTTATCCACAGTGAGGCGCTCAAAC TGCTCGCTGAGCATCATCTTTCGCCGTTGCGCAGCGGGCCGCCACGGGCATTTCGCGTGGGTGTACCGGCGTTCGATCTGTTTCCGTTTGCCACGTGGGC CAAGCTTTACGCGGATTTCTGGCGTGATCCGGAGCCAGCCTTGCTCGGCTACGGCGACCCGGCTGGCGACCCGGACCTGCGGGCCCTGATTGCCGCTTAT TTGCGCAGCTCGCGAGGGCTCAACTGCAGCGCTGAACAAATTCTGATCACCACCGGCGCACAGGAGGCCATAGGGCTTTGTGCACAGCTGCTGGTGAACG CTGGCGACACCGTGGCGGTCGAGAATCCCGGGTACCGCGCGGCCGGGCATGCCTTTGCCAATGCCGGGGCAGCCCTGCGCGGTATACCGGTGGATGAGGA GGGCTTGGTGTGCGGGGCGCTGGAGCAGGTGCAGGGGTGCCGGATGGTGTACGTGACCCCCGCGCATCAATACCCCACCGGGGTGACGCTGAGCTTGGCG CGGCGCCTGGCGTTGCTGGAATGGGCCGAGCGCAATGAGGGCTGGATTGTCGAGGATGACTATGACGGCGAGTACCGCTACAGCGGTGCGCCGTTGGCGC CCCTGGCCGCGCTGGATCGCAGCGGGCGCGTGCTGTACGTGGGTACCTTCGGCAAGGTGGCGTTCCCCGCCTTGCGGCTGGGCTACCTGGTGGTGCCGCC GGCCATGGTCGAAGCCTTTTCGCGCAAGCGCGGCGTTGCCCTGCGCCATTCGGAAATAGGCGTGCAGCGGGTCATGGCACGGTTCATCGCCGACGGTCAT TTCCAACGCCACATCCGCCGCATGCGCCGCGCGGCACTGGCGCGCCGCAATGCGCTGCTGGACAACTGGCCTGACGGTATTGCCGGCATGGGCAAACTGC CCACGGTTTCGGCCGGCTTGCACCTGACCATCCCGGTGCAGACCCTGGCGCGTGAACAGGAACTGGTGACGAAGGCAGAAGAAGTGGGGGTGGAAGTGAA CGCCTTGAGCCACTACTGGCTGGGCGACTCCGACGAGCCTGTGGATAACCGGGCGGGGCTGGTGCTGGGGTTTGCGGCGGTGGATGAAGCCGCCACCGTG GCAGCACTAGCGTGCCTGCGCAATGCCTGGCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACATTGCGCCGTGTGACGTGTGGGAGCGGGCAGAGCCCGCTTCCACAGAACTCGATCGGTACACGAAGACCAGGTTACGTGCCGGATTTGATCTTGGTCC AGGCGCGGGTGCGGGCGCGCTCGGCGTCGTGGTCCAGTGGCTTGAGCGTGTAGAGCTTGGCCATCATCTCGTCCGTGGGGTAAAGGTTGGGGTTGTTGCG AATGGCTTCCGAGACTTTCGCGGTGGCGTCCTTGTTGGGGTTCGGGTAGCCGACAAAGTCACTGATGGGAGCGATCACCTGGGGTTGCAGCAAGTAGTTG ATGAACGTGTGGGCGTCCTCGATATTGGCCGCGCCCTTGGGAATGGCGAGCATGTCGAACCAGATCGGCGCGCCTTCCTTGGGCAGGCGCATGTCCACCA CCACGCCGTTCTTGGCGTCGCGGGCGCGGTTGGCGGCCTGGGAGAAGCTGCCCGAGTAGCCCACGGCCACGCAGATATCGCCGTTGGCAATGTCAGCCAT
|
|
| Amino Acid Sequence |
>GntR family transcriptional regulator
MITSPALPFDPAGIQLDAGRGLSRELYQALRARVLDGRLASGTRMPASRDLARALSVSRNTVVRAYDQLYAEGFLQGRVGDGTYVARLEPTPEKLSTKLS TGLYRGLSTALSTKLIKNTGISSSKVIHSEALKLLAEHHLSPLRSGPPRAFRVGVPAFDLFPFATWAKLYADFWRDPEPALLGYGDPAGDPDLRALIAAY LRSSRGLNCSAEQILITTGAQEAIGLCAQLLVNAGDTVAVENPGYRAAGHAFANAGAALRGIPVDEEGLVCGALEQVQGCRMVYVTPAHQYPTGVTLSLA RRLALLEWAERNEGWIVEDDYDGEYRYSGAPLAPLAALDRSGRVLYVGTFGKVAFPALRLGYLVVPPAMVEAFSRKRGVALRHSEIGVQRVMARFIADGH FQRHIRRMRRAALARRNALLDNWPDGIAGMGKLPTVSAGLHLTIPVQTLAREQELVTKAEEVGVEVNALSHYWLGDSDEPVDNRAGLVLGFAAVDEAATV AALACLRNAWR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|