Pseudomonas sp. M47T1, PMM47T1_06151
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig04, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATTACTCGCTTAAATGAAGCATTTCAGCCGCCGTTCGGTTACCTTGAGGGTAGCCGCACAGCGTCTGGACCGGCTGTTTGAAAACTAGCGCTTCCCTTA AGGCTGGTGATTTTTTAAACTACTGAGTCCGCTCGCCCATCCGGGCTGCGCGCATACTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAA GACTGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCTCTGGTCCAGT GGGAAAACGACAAGCCTACCGTTGTGGCCCTGCGCGAAATCGCTGAAGGCCTTATGAGCTACGAGTTCATCGCCAACGCCGAAATCGTCGAAGACGAGCC GCTGTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGAATACAGCTTGCGGCAGGAGTTTTC
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| DNA Sequence for Gene |
>PMM47T1_06151
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCGCAGACCAGGTCAACTTGGTGCGCCGGGCGTATTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGCCGTAGCGGCGAGCCTTACGTCACGCATCCGCTGGCGGTGGCCAATATCCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCAGCCATGCTGCATGACGTGATCGAAGACACCGGCATCGCCAAGGAAGCGCTCAGCGCACAATTTGGCGAGACCGTGGCTGAACTGGTCGATGGGGTC AGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAAGCCGAGAACTTCCAGAAAATGGCCATGGCCATGGCACGCGACATTCGCGTGATCC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAACGCCGGCGCATCGCCAAGGAAACCCTGGAAATCTACGC CCCCATCGCCAATCGCCTGGGCATGCACAACGTGCGCGTGGAATTCGAAGACCTGGGCTTCAAGGCCATGTACCCGATGCGCTCTGCGCGCATCTACCAG GCGGTGAAGCGTGCGCGCGGCAACCGCAAGGAAATCGTCAACAAGATCGAACAGTCTCTGGGCCACTGCCTGGCCGTGGACGGTATCGAGGGCGATGTCA GCGGCCGCCAGAAGCACATCTATGGCATTTACAAGAAGATGCGCGGCAAGCGCCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGCATCGTGGT GGATAAGGTAGACACCTGCTACCGCGTACTGGGCGCCGTGCACAATCTGTACAAGCCATTGCCGGGCCGCTTCAAGGATTACATCGCGATTCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACCTTGTTCGGCATGCACGGCGTACCCATCGAAATCCAGATTCGCACCCGCGAGATGGAAGAGATGGCCAACAACG GAATCGCCGCCCACTGGCTGTACAAGTCCAGCGACGACGAGCAGCCCAAGGGCACTCACGCGCGGGCTCGCCAGTGGGTCAAGGGCGTGCTGGAAATGCA GCAACGCGCTGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAGGGCCGCATCATGGAG CTGCCCAAGGGCTCGACAGCCGTCGACTTCGCCTATGCGGTGCACACCGACGTGGGCAACAGCTGCATTGCGTGCCGCATCAACCGCCGGCTGGCGCCGC TGTCCGAACCGCTGCAAAGCGGTTCCACGGTGGAAATCGTCAGCGCCCCGGGGGCCCGCCCGAACCCGGCCTGGCTCAATTTCGTGGTCACCGGCAAGGC ACGCACGCACATTCGCCACGCGCTCAAGCTGCAACGCCGCTCCGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAGGTGCTCAACGGCTTCGACAGT GCGCTGGAGAGCATCCCGGCCGACCGCATTCACGCCATGCTCGCCGAATATCGGCTGGAGCAGATCGAAGACCTGCTGGAAGACATCGGCCTTGGCAACC GCATGGCCTACGTAGTGGCGCGTCGCCTGTTGGCCACTGAAGGCGAGCAACTGCCCAGCCCCGAAGGACCATTGGCCATTCGCGGCACCGAAGGCCTGGT GCTCAGCTACGCCAAATGCTGTACGCCGATACCGGGCGACCCGATCGTGGGGCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAAAACTGCCGC AATATCAGTGAAATCCGCCACAATCCGGAAAAGTGCATTCAGCTTTCCTGGGCCAAGGACGTCACTGGCGAATTCAATGTCGAGTTGCGCGTGGAACTCG AGCACCAGCGCGGCCTGATCGCCTTGCTGGCCAGCAGCGTCAACGCCGCCGATGGCAATATCGAGAAGATCAGCATGGACGAGCGCGATGGCCGCATCAG CGTGGTCCAGTTGGTCGTCAGCGTGCACGACCGCGTGCACCTGGCTCGCGTGATCAAGAAACTGCGGGCGCTGACCGGCGTCATCCGCATCACGCGGATG CGTGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCAGCCTTCCCCCTGCCAAGGAGTCATCAATGACCAAGACTGTTATCACCAGCGACAAGGCCCCGGCGGCCATCGGTACCTACTCCCAGGCAATCAAGG CGGGTAATACCGTCTACATGTCCGGCCAGATTCCGCTGGACCCGAAAACCATGGAACTGGTTGAAGGCTTCGAAGCCCAGACCGTGCAGGTCTTCGAAAA CCTCAAAGCCGTGGCCGAGGCCGCTGGCGGCTCGTTCAAAGACATCGTCAAGCTGAACATTTTCCTTACCGACCTGAGCCACTTCGCCAAGGTCAACGAA GTGATGGGCCGCTATTTCGAACAGCCTTACCCTGCCCGCGCCGCCATCGGCGTGGCCGCACTGCCACGCGGTGCCCAGGTTGAAATGGACGCCATCCTGG TCGTCGAGTAAACCTTGTGTGGCGAGGTGCCCCGCGCCTCGCCTTTTTCCCTCCGGAAGGATTCCCCACATGCGCCATGCGCTTGTCCTGCCGTTGCTGG
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGADQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHNVRVEFEDLGFKAMYPMRSARIYQ AVKRARGNRKEIVNKIEQSLGHCLAVDGIEGDVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIVVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSDDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALESIPADRIHAMLAEYRLEQIEDLLEDIGLGNRMAYVVARRLLATEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLENCR NISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRM RA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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