Pseudomonas sp. M47T1, PMM47T1_05259
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig03, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAACCAGGGGCGAACCCCGCGCGATCCTCAGGCCGCCGTCAAGTTCCCTGGCCCACCCCCGATTTCATGAGGCGGGGCGGCGAAAACGGAAAAAAAGTGA AAAATTTGTCATGGGTTGGCACGTTTGAGCACGCTTGTTGCATTCCTACCCACCCAAGTCGACACGCACCCCGGGACGGGATGACGCGAGACAAATAACA ACAGCTGCACGGAAGCCCATGGAGTTTTCAGGGATGAGCTTAGAACCTTTCTACCTATGCTCAAGCCCTCGGAAACAGCGCTGTAGTTGTGCAGCTTGTT ACATAAAAAGCTGTGGTTTGCGACATGGACGGAAGTTTTTGCGACAGGCTCAGAAACACGTCAACGATTGAGCTCAGAAGTATCGCCATAAAGCGTCAGC GTGATATAAGTTTACGCCGACACAAAAAGAAAGAGCCGCCCAGATAATAAACCAGGTGGGACGGCAGTACTCTTCCTAAAAACCAAAGGAGCAAATCACG
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| DNA Sequence for Gene |
>PMM47T1_05259
ATGAAAGTGATTAAGTGGAGCGCAATCGCACTGGCAGTTACCGCGGCTAGCACGCAGCTGGCCAGCGCCGCAGCATTCGTTAGCGATCAGGCAGACGCCA AGGGCTTCGTCGAAGACGCAACCCTGAACATGCTGCTGCGCAACTACTACTTCAACCGCGACAACAAGCACCAGAGCCATGACTCCATTGACTGGACTCA GGGCATCCAGGGCGTCTTCACCTCTGGCTTCACCCAAGGCACCATCGGTGTCGGCGTCGACGCGTTCGGCTACCTGGGCTTGAAACTCGACGGCGGCAAG GGTACCAGCGGCACCAACAACCTGACTGTAGGCGGTGATGGCGAACCGAACAGCAGCTACGGCAAAGCCGGCGCTGCCATCAAGTTCCGCTTCTCGAAAA CCGAGCTGAAAATCGGCGACCAGCAGCCTACCACTTCGCCAGTATTCGCAGTCGGCGGCTCCCGCCTGACTCCGCAGACCGCTACCGGTATCACCCTGCA GAGCAGCGAAGTCAAAAACCTGGACCTGGAAGCGGGCCACTTCACGTCGTCCACCAGCGAAAGCCAGACCAACCGTGACGGCAACCTGTGGTCGCAATAT GCTATCGGCCTGAACGGCAGCGAAGACGGCGTTTCCTCCCGCTCTATCGACTACGCGGGCGGCAAGTACGCGTTCAGCGACAACTTCACCGCGTCCCTGT ACGGTGCCAAGCTGGATGACATCTGGAACCAGTACTACACCAACCTGAACTACGTCCTGCCACTGGCTGATACCCAGTCGCTGACCTTCGACTTCAACTA TTACAAAACCACTGACAGCGGCAGCGCCAACGCCGGCAAAATCGACAACAACACCTTCTCGTTGTCGGCCGCCTATGCCTTCCTGTCGGCTCACACCGTT ACCCTGGCCTTCCAGAAGGTCAACGGCGACACCCCATTCGACTACGTGGGCGTGGGTGACAACAACCGCGGCGCTGACTCGATCTTCCTGGCCAACTCCG TTCAGTACTCCGACTTCAACGGCCCGGGCGAGAAATCGGCCCAGATCCGTTACGACCTGAACATGGCCACCTTCGGCGTGCCTGGCCTGAGCTTCATGGC CCGTTACGTGAAAGGCTGGGACATCGACTACGCCAGCATCTCTGCTGACAGCGCCTACTACAACGCTGACCGCGCTAATGCCAACGATGAGAAACACCAC GAAACCAACCTGGAAGCCAAATACGTAATCCAGGAAGGCCCAGCCAAGGACCTGTCGTTCCGCATCCGTCAGGCTTGGCACAGCGCCAGCAGCCTGCAGG CTGACGGCGACGCCAACGAGTTCCGCCTGATCGTCGACTACCCACTGTCGATCCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACAGGGCACTCGCCAGCGGTACCGATAGCTATATAAAGAAGCCCGGCTGATGCCGGGCTTTTTTTTGTCACCACCGCAGCTCGCGGCGGCGGCCACAC GGCATCGGCCTGTACGTCGCCGGATGTGCACCGTACAATGCCCAGCTTCAATAAAATTCAGCAACAGACACGGCCTATCATGCGCACCAGTCAATATTTG CTCGCCACCCAGAAAGAAATTCCCAACGACGCGGTTGTCATCAGCCATCAACTGATGCTGCGTGCCGGCATGATCCGCAAGCTTGCCTCGGGCCTGTACA CCTGGCTGCCGATGGGCCTGCGCGTAATGCGCAAGGTGGAAAACATCGTGCGCGAGGAAATGAACGCCGCCGGCGCCCTGGAAGTGCTGATGCCGGGCAT CCAGCCAGCCGAACTGTGGCAGGAATCGGGCCGCTGGGAACAGTACGGCCCTGAGCTACTGCGCCTGAAGGATCGCAACGACCGCGACTTCTGCGCCGGC
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| Amino Acid Sequence |
>porin
MKVIKWSAIALAVTAASTQLASAAAFVSDQADAKGFVEDATLNMLLRNYYFNRDNKHQSHDSIDWTQGIQGVFTSGFTQGTIGVGVDAFGYLGLKLDGGK GTSGTNNLTVGGDGEPNSSYGKAGAAIKFRFSKTELKIGDQQPTTSPVFAVGGSRLTPQTATGITLQSSEVKNLDLEAGHFTSSTSESQTNRDGNLWSQY AIGLNGSEDGVSSRSIDYAGGKYAFSDNFTASLYGAKLDDIWNQYYTNLNYVLPLADTQSLTFDFNYYKTTDSGSANAGKIDNNTFSLSAAYAFLSAHTV TLAFQKVNGDTPFDYVGVGDNNRGADSIFLANSVQYSDFNGPGEKSAQIRYDLNMATFGVPGLSFMARYVKGWDIDYASISADSAYYNADRANANDEKHH ETNLEAKYVIQEGPAKDLSFRIRQAWHSASSLQADGDANEFRLIVDYPLSIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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